Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0686
         (600 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger transc...    23   5.7  
DQ370045-1|ABD18606.1|  285|Anopheles gambiae putative TIL domai...    23   7.5  
AF532982-1|AAQ10289.1|  459|Anopheles gambiae putative RNA methy...    23   7.5  

>AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger
           transcription factor pannier protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 13  PCELEPGXGSHIPGASLQALHRS 81
           P  + PG GS + GASL   H +
Sbjct: 478 PHHVSPGMGSTVNGASLTHSHHA 500


>DQ370045-1|ABD18606.1|  285|Anopheles gambiae putative TIL domain
           protein protein.
          Length = 285

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -1

Query: 423 SRCPLG*RSTCLGPENLQSPSVAPTCV*LRCCPR 322
           ++C  G  S C+  +     +    C+ LR CPR
Sbjct: 85  TKCAAGFTSGCVCKKGFVRKTEFGKCIPLRLCPR 118


>AF532982-1|AAQ10289.1|  459|Anopheles gambiae putative RNA
           methylase protein.
          Length = 459

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 418 MSSRLTEHMSWXGKSPIPFRRAHV 347
           MSS L +++ W  +  + FR+A +
Sbjct: 1   MSSTLKKYVLWFAQEHVDFRQAEI 24


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 508,909
Number of Sequences: 2352
Number of extensions: 8225
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 58029966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)