Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0686
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036698-1|AAB88352.1|  425|Caenorhabditis elegans Hypothetical ...    82   3e-16
AC024794-6|AAK68493.2|  425|Caenorhabditis elegans Hypothetical ...    81   8e-16
Z35603-2|CAA84674.1|  418|Caenorhabditis elegans Hypothetical pr...    67   1e-11
Z70034-5|CAA93851.2|  197|Caenorhabditis elegans Hypothetical pr...    31   0.48 
Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>AF036698-1|AAB88352.1|  425|Caenorhabditis elegans Hypothetical
           protein B0273.3 protein.
          Length = 425

 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 43/121 (35%), Positives = 63/121 (52%), Gaps = 3/121 (2%)
 Frame = +3

Query: 141 LLGRRPLSDLRDRIACNNDHDMRVDVSHXXXXXXXXXXKEVFPSGFLFINNTFYVDTREG 320
           L G   L DL++  +C  D     D S           K  +PS   FI++TFY+D+  G
Sbjct: 211 LTGDHTLRDLKNAFSCPIDFSFSDDFSEKKPSFKDMA-KNKWPSSMFFIHDTFYIDSNTG 269

Query: 321 --CVDNSAVIRTWARRKG-IGDFPXQDMCSVNLEDIVIKLGHPEVYVHQGACEHVFTFSE 491
              VD S  IRTWA++   IG    + M    + D++ +LG P VY+HQG CEH+  F++
Sbjct: 270 DQFVDPSITIRTWAKKFDYIGPMHVKQMSETRIGDLICRLGQPYVYIHQGVCEHLIVFND 329

Query: 492 V 494
           +
Sbjct: 330 L 330


>AC024794-6|AAK68493.2|  425|Caenorhabditis elegans Hypothetical
           protein Y48G1BM.1 protein.
          Length = 425

 Score = 80.6 bits (190), Expect = 8e-16
 Identities = 42/121 (34%), Positives = 63/121 (52%), Gaps = 3/121 (2%)
 Frame = +3

Query: 141 LLGRRPLSDLRDRIACNNDHDMRVDVSHXXXXXXXXXXKEVFPSGFLFINNTFYVDTREG 320
           L G   L DL++  +C  D     D S           K  +PS   FI++TFY+D+  G
Sbjct: 211 LTGDHTLRDLKNAFSCPIDFSFSDDFSEKKPSFKDMA-KNKWPSSMFFIHDTFYIDSNTG 269

Query: 321 --CVDNSAVIRTWARRKG-IGDFPXQDMCSVNLEDIVIKLGHPEVYVHQGACEHVFTFSE 491
              VD S  IR+WA++   IG    + M    + D++ +LG P VY+HQG CEH+  F++
Sbjct: 270 DKFVDPSITIRSWAKKFDYIGPMHVKQMSETRIGDLICRLGQPYVYIHQGVCEHLIVFND 329

Query: 492 V 494
           +
Sbjct: 330 L 330


>Z35603-2|CAA84674.1|  418|Caenorhabditis elegans Hypothetical
           protein T02C12.2 protein.
          Length = 418

 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 3/123 (2%)
 Frame = +3

Query: 159 LSDLRDRIACNNDHDMRVDVSHXXXXXXXXXXKEV-FPSGFLFINNTFYVDTREGCVDNS 335
           LSDLR +  C +D  + ++               V FPS F+F+++TFYVD     +D S
Sbjct: 208 LSDLRQKFVCQSDTIVPLENGLELDPPNLDNATAVRFPSSFIFVHDTFYVDMPPNAIDIS 267

Query: 336 AVIRTWARRKGIGDFPXQ--DMCSVNLEDIVIKLGHPEVYVHQGACEHVFTFSEVXCVTX 509
             IR +   + I D P +   M  V + D+ ++LG P ++ H G CEH+  F ++  +  
Sbjct: 268 HPIRNFMLHREIYD-PVEACSMEGVRIIDLKLRLGQPYIFQHSGNCEHLLVFHDLRLLHE 326

Query: 510 AGP 518
           + P
Sbjct: 327 SDP 329


>Z70034-5|CAA93851.2|  197|Caenorhabditis elegans Hypothetical
           protein C18E9.5 protein.
          Length = 197

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +3

Query: 270 SGFLFINNTFYVDTREGCVDNSAVIRTWARRKGIGDFPXQDMCSVNLED 416
           S ++F+N+TF+VD R GC   +     + RR G      Q   S+++E+
Sbjct: 133 SHYVFVNHTFFVD-RNGCTRQAYGYDEYLRRLGFHKIRMQRTESISVEE 180


>Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical
           protein C09G5.6 protein.
          Length = 948

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 356 RPRAYDCAVVHAPFPCVHVKRVVYEQETGWEH 261
           RPR YD      P P   V+   Y++ +G EH
Sbjct: 583 RPRGYDSERAEEPRPRQTVRTNTYDENSGAEH 614


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,835,323
Number of Sequences: 27780
Number of extensions: 182815
Number of successful extensions: 423
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)