Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0686
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   2.3  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   2.3  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   5.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.3  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 35  KDLIFRVRVYRPFIDHLHKXPKHAQP 112
           KD  F  R+Y+  ID+ H    H +P
Sbjct: 414 KDPAF-YRIYKRIIDYYHSYKMHQKP 438


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 35  KDLIFRVRVYRPFIDHLHKXPKHAQP 112
           KD  F  R+Y+  ID+ H    H +P
Sbjct: 414 KDPAF-YRIYKRIIDYYHSYKMHQKP 438


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 387 QDMCSVNLEDIVIKLGHPEVYVHQGACEHVFTFSEVXCVT 506
           QD+   +L  +V  + H EV VHQ +       +EV  V+
Sbjct: 74  QDVAFSDLHALVEFIYHGEVNVHQRSLSSFLKTAEVLRVS 113


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 402 VNLEDIVIKLGHPE 443
           +N+  I  KLGHPE
Sbjct: 568 LNMSAIQFKLGHPE 581


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,677
Number of Sequences: 438
Number of extensions: 2013
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)