Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0686
         (600 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g28560.1 68414.m03515 snRNA activating complex family protein...    31   0.58 
At4g19270.1 68417.m02841 hypothetical protein                          27   9.5  

>At1g28560.1 68414.m03515 snRNA activating complex family protein
           similar to snRNA activating protein complex 50 kDa
           subunit (SNAPc 50 kDa subunit) (Proximal sequence
           element-binding transcription factor beta subunit)
           (PSE-binding factor beta subunit) (PTF beta subunit)
           (Swiss-Prot:Q92966) [Homo sapiens]
          Length = 375

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 390 DMCSVNLEDIVIKLGHPEVYVHQGACEHVFTFSEV 494
           DM S +  DI  ++G   VY HQG C+H     ++
Sbjct: 262 DMQSTHFCDIRFRVGASYVYCHQGDCKHTIVIRDM 296


>At4g19270.1 68417.m02841 hypothetical protein 
          Length = 141

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +3

Query: 264 FPSGFLFINNTFYVDTREGCVDNSAVIRTWARRKGIGDFP 383
           FP+  +F    F  D   GC     V+R W+   G G +P
Sbjct: 92  FPAASVFRRRRFSGDGGCGCPAAEVVVRRWSWLAGGGGYP 131


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,312,680
Number of Sequences: 28952
Number of extensions: 169877
Number of successful extensions: 371
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)