Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0685
         (399 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1177 + 35147036-35147038,35147128-35147220,35147322-351474...   130   5e-31
11_01_0658 + 5342508-5343602,5343697-5343764,5343994-5344042,534...    27   5.5  
08_02_1601 - 28138206-28138597,28138928-28139054,28139150-281399...    27   5.5  
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924...    27   5.5  
05_01_0554 + 4856131-4856605,4858051-4858098,4860611-4860792,486...    27   7.2  
01_01_1184 - 9430623-9430658,9430945-9431013,9431104-9431270,943...    26   9.5  

>01_06_1177 +
           35147036-35147038,35147128-35147220,35147322-35147406,
           35147588-35147760
          Length = 117

 Score =  130 bits (313), Expect = 5e-31
 Identities = 57/96 (59%), Positives = 77/96 (80%)
 Frame = +3

Query: 48  RGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYC 227
           RGHVK +RC+NCA+C PKDKAIK+F +RNIVE AA+RD+ +A V+  + LPKLYAK+H+C
Sbjct: 15  RGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHDGYVLPKLYAKVHHC 74

Query: 228 VSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQ 335
           VSCAIH+ +VR RS+++RR R PP+  F R +  P+
Sbjct: 75  VSCAIHAHIVRVRSRENRRDRRPPE-RFRRRVPDPR 109



 Score = 29.1 bits (62), Expect = 1.4
 Identities = 12/14 (85%), Positives = 12/14 (85%)
 Frame = +2

Query: 5  MTRKRRNGGRAKHG 46
          MT KRRNGGR KHG
Sbjct: 1  MTFKRRNGGRNKHG 14


>11_01_0658 +
           5342508-5343602,5343697-5343764,5343994-5344042,
           5344217-5344333,5344438-5344506,5344631-5344725,
           5345580-5345658,5346499-5346563,5347368-5347461,
           5347675-5347744,5348363-5349357
          Length = 931

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 239 HPQQSCQEQIEERQKNPYSSQE 304
           +PQQS Q+Q EE+Q  P SS +
Sbjct: 616 NPQQSQQQQPEEQQSIPQSSNQ 637


>08_02_1601 -
           28138206-28138597,28138928-28139054,28139150-28139914,
           28140714-28140929,28141433-28141903
          Length = 656

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 173 GIVNISDRRRFYDVPNHELFDSLVLWHAPRAVCASHSFN 57
           GI  + D   +YD  +  LF+ L+    P A  +SH+F+
Sbjct: 439 GIDMVDDGMPYYDAMDDNLFNDLLSSVQPSAGSSSHAFS 477


>02_04_0433 -
           22891261-22891509,22892181-22892301,22892405-22892496,
           22892692-22892755,22892855-22892920,22893102-22893193,
           22893991-22894050,22894181-22894270,22894484-22894613,
           22895066-22895157,22895299-22895373,22895663-22895754,
           22896496-22896586,22897541-22897574,22897745-22897791,
           22899110-22899209,22899300-22899436,22900837-22901015,
           22901146-22901188,22901264-22901297,22901839-22901948,
           22902043-22902224,22903062-22903168,22903266-22903480
          Length = 833

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = +1

Query: 226 ACHAPSTAKLSGTDRRKTEESVLLPRVTSLGTCHVHRQC 342
           ACH     ++ G+D +K   +  +P    + +C  H  C
Sbjct: 705 ACHVDYNEEIRGSDEKKPAANKFIPSSQRVVSCAAHPFC 743


>05_01_0554 +
           4856131-4856605,4858051-4858098,4860611-4860792,
           4861409-4863136
          Length = 810

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 155 DRRRFYDVPNHELFD 111
           DR  FYD PN+E FD
Sbjct: 354 DRTLFYDEPNYEAFD 368


>01_01_1184 -
           9430623-9430658,9430945-9431013,9431104-9431270,
           9431596-9431693,9431790-9431929,9432911-9433120,
           9434314-9434832
          Length = 412

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
 Frame = -2

Query: 188 HWVYRGI---VNISDRRR-FYDVPNHELFDSLVLWHAPRAVCASHSFNVTTXHAWRVLHY 21
           H + RG+   V   D RR    VPN      + +    R +  +H       +A  + H 
Sbjct: 302 HRLMRGVWTNVRFGDMRRALAAVPNQRFVPFIFMAACERLILLNHDPRELRDYAALLYHC 361

Query: 20  GAYESC 3
           G YE C
Sbjct: 362 GYYEDC 367


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,620,223
Number of Sequences: 37544
Number of extensions: 177987
Number of successful extensions: 446
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)