Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0685
         (399 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13168| Best HMM Match : Ribosomal_S26e (HMM E-Value=0)             163   6e-41
SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.)                36   0.016
SB_10952| Best HMM Match : Exo_endo_phos (HMM E-Value=4.1e-08)         28   2.4  
SB_12882| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.2  
SB_43935| Best HMM Match : 7tm_1 (HMM E-Value=0)                       27   7.4  

>SB_13168| Best HMM Match : Ribosomal_S26e (HMM E-Value=0)
          Length = 289

 Score =  163 bits (395), Expect = 6e-41
 Identities = 74/84 (88%), Positives = 79/84 (94%)
 Frame = +3

Query: 48  RGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYC 227
           RGHVK VRCTNCARCVPKDK+IKKFVIRNIVEAAAVRDI DASVY ++ LPKLY KLHYC
Sbjct: 15  RGHVKFVRCTNCARCVPKDKSIKKFVIRNIVEAAAVRDIADASVYEVYALPKLYVKLHYC 74

Query: 228 VSCAIHSKVVRNRSKKDRRIRTPP 299
           VSCAIHSKVVRNRSK+DR+IRTPP
Sbjct: 75  VSCAIHSKVVRNRSKEDRKIRTPP 98



 Score = 29.1 bits (62), Expect = 1.4
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = +2

Query: 5  MTRKRRNGGRAKHG 46
          MT+KR NGGR+KHG
Sbjct: 1  MTKKRCNGGRSKHG 14


>SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 35.5 bits (78), Expect = 0.016
 Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
 Frame = +3

Query: 81  CAR-CVPKDKAIKKFVIRNIVEAAAVRD--INDASVYPMFQLPKLYAKLHYC--VS--CA 239
           C R C+ +D+ I  FVI     AAAVRD  + D ++Y      +       C  VS  C 
Sbjct: 664 CERDCIMRDRTICDFVICG--RAAAVRDCIMRDRAIYNCVMSDRFIRDCVMCDRVSRDCL 721

Query: 240 IHSKVVRNRSKKDRRIR 290
           IH +VVR+   +DR IR
Sbjct: 722 IHDRVVRDCVMRDRVIR 738


>SB_10952| Best HMM Match : Exo_endo_phos (HMM E-Value=4.1e-08)
          Length = 558

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
 Frame = -2

Query: 188 HWVYRGIVN------ISDRRRFYDVPNHELFDSLVLWH-APRAVCASHS 63
           H+  RGI N      +S+RR+F  V N E  D +VL H  P+A C+  S
Sbjct: 441 HYGIRGIANEWFSSYLSNRRQFVSVNNSE-SDEVVLTHGVPQAKCSIQS 488


>SB_12882| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 30 DAPSMXRGHVKAVRCTNCARCV 95
          D  S  RGHV  V C +C  CV
Sbjct: 4  DVTSSCRGHVVTVSCLSCRDCV 25


>SB_43935| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 842

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 93  VPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKL 206
           + K K  +  VI   + A AV D++  +VYP+F  P L
Sbjct: 47  IVKKKRNEGKVIYLFIGALAVTDVSLLAVYPLFAFPVL 84


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,661,767
Number of Sequences: 59808
Number of extensions: 191986
Number of successful extensions: 463
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)