Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0685
         (399 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56340.1 68416.m06264 40S ribosomal protein S26 (RPS26C) seve...   139   7e-34
At2g40590.1 68415.m05007 40S ribosomal protein S26 (RPS26B)           136   7e-33
At2g40510.1 68415.m04999 40S ribosomal protein S26 (RPS26A)           136   7e-33
At3g14440.1 68416.m01830 9-cis-epoxycarotenoid dioxygenase, puta...    28   2.0  
At3g60200.1 68416.m06726 expressed protein hypothetical proteins...    28   2.6  
At1g52450.1 68414.m05921 ubiquitin carboxyl-terminal hydrolase-r...    27   4.6  
At1g50730.1 68414.m05705 expressed protein                             27   6.1  
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ...    26   8.0  

>At3g56340.1 68416.m06264 40S ribosomal protein S26 (RPS26C) several
           40S ribosomal protein S26
          Length = 130

 Score =  139 bits (336), Expect = 7e-34
 Identities = 61/99 (61%), Positives = 75/99 (75%)
 Frame = +3

Query: 48  RGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYC 227
           RGHVK +RC+NC +C PKDKAIK+F++RNIVE AA+RD+ +ASVY  + LPKLYAK  YC
Sbjct: 15  RGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEGYTLPKLYAKTQYC 74

Query: 228 VSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQAVQ 344
           VSCAIHS VVR RS+ +RR+RTPP     R    P+  Q
Sbjct: 75  VSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPAQ 113



 Score = 26.6 bits (56), Expect = 6.1
 Identities = 11/13 (84%), Positives = 11/13 (84%)
 Frame = +2

Query: 5  MTRKRRNGGRAKH 43
          MT KRRNGGR KH
Sbjct: 1  MTFKRRNGGRNKH 13


>At2g40590.1 68415.m05007 40S ribosomal protein S26 (RPS26B) 
          Length = 131

 Score =  136 bits (328), Expect = 7e-33
 Identities = 60/99 (60%), Positives = 74/99 (74%)
 Frame = +3

Query: 48  RGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYC 227
           RGHV  +RC+NC +C PKDKAIK+F++RNIVE AA+RD+ +ASVY  + LPKLYAK  YC
Sbjct: 15  RGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEGYTLPKLYAKTQYC 74

Query: 228 VSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQAVQ 344
           VSCAIHS VVR RS+ +RR+RTPP     R    P+  Q
Sbjct: 75  VSCAIHSHVVRVRSRTNRRVRTPPPRFTRRKEDTPKPGQ 113



 Score = 26.6 bits (56), Expect = 6.1
 Identities = 11/13 (84%), Positives = 11/13 (84%)
 Frame = +2

Query: 5  MTRKRRNGGRAKH 43
          MT KRRNGGR KH
Sbjct: 1  MTFKRRNGGRNKH 13


>At2g40510.1 68415.m04999 40S ribosomal protein S26 (RPS26A)
          Length = 133

 Score =  136 bits (328), Expect = 7e-33
 Identities = 60/99 (60%), Positives = 74/99 (74%)
 Frame = +3

Query: 48  RGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYC 227
           RGHV  +RC+NC +C PKDKAIK+F++RNIVE AA+RD+ +ASVY  + LPKLYAK  YC
Sbjct: 15  RGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEGYTLPKLYAKTQYC 74

Query: 228 VSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQAVQ 344
           VSCAIHS VVR RS+ +RR+RTPP     R    P+  Q
Sbjct: 75  VSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPGQ 113



 Score = 26.6 bits (56), Expect = 6.1
 Identities = 11/13 (84%), Positives = 11/13 (84%)
 Frame = +2

Query: 5  MTRKRRNGGRAKH 43
          MT KRRNGGR KH
Sbjct: 1  MTFKRRNGGRNKH 13


>At3g14440.1 68416.m01830 9-cis-epoxycarotenoid dioxygenase,
           putative / neoxanthin cleavage enzyme, putative /
           carotenoid cleavage dioxygenase, putative similar to
           9-cis-epoxycarotenoid dioxygenase GB:AAF26356
           [GI:6715257][Phaseolus vulgaris]
          Length = 599

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 216 LHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQAV 341
           L YC S  + S+V R  +     + TPP  +FP+  S   A+
Sbjct: 32  LSYCSSLPMASRVTRKLNVSSA-LHTPPALHFPKQSSNSPAI 72


>At3g60200.1 68416.m06726 expressed protein hypothetical proteins
           At2g44600 - Arabidopsis thaliana, EMBL:AAC27462
          Length = 305

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +3

Query: 216 LHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQAVQR 347
           L    S A+ + V  N+SKK      PP   FPR +S P   +R
Sbjct: 26  LSLAASAAVSAAVEDNQSKKSNNNNHPPLLIFPRSVS-PYVTRR 68


>At1g52450.1 68414.m05921 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1136

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +3

Query: 63  AVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKL 206
           ++ C  C   VP+    +K  +       AVRD+ + ++ P F +P L
Sbjct: 572 SILCDRCEEIVPEISLARKIFV------CAVRDVFEGALLPTFDVPDL 613


>At1g50730.1 68414.m05705 expressed protein
          Length = 1013

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 12/57 (21%), Positives = 29/57 (50%)
 Frame = +3

Query: 9    LVSAVMEDAPSMXRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASV 179
            L+ A+ +++  + RG++    C   +  +  ++ +K+  +R +  A      ND+SV
Sbjct: 854  LLDAIEQESSQISRGNMALEACNCISSALVMNEKVKELCLRLLETAKGCLGANDSSV 910


>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 1056

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 30  DAPSMXRGHV-KAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDIN 167
           D+  + RG + K      CARCVP  K I+   +  +V  +A  D+N
Sbjct: 591 DSDHIWRGMIAKGGTPVCCARCVPMGKGIET-KLPEVVNCSARTDLN 636


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,249,598
Number of Sequences: 28952
Number of extensions: 126311
Number of successful extensions: 323
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)