Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0684
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom...   150   2e-37
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    28   1.6  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    27   2.9  
SPBC31F10.15c |atp15||F0-ATPase epsilon subunit|Schizosaccharomy...    27   2.9  
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch...    27   3.8  
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos...    26   5.0  
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz...    26   6.6  
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    26   6.6  
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    25   8.7  
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    25   8.7  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    25   8.7  

>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score =  150 bits (363), Expect = 2e-37
 Identities = 79/176 (44%), Positives = 109/176 (61%), Gaps = 8/176 (4%)
 Frame = +1

Query: 166 SSQEPDVLFEALNNAGIVTLNRPKALNSLNTSMVSKLLPQLQEWEKSK--SLVIIKGAGE 339
           +S    VL+E+ N A I TLNRPK LN++N  M+  +LP+L   E+S    ++I+KG G 
Sbjct: 52  TSSNDTVLYESKNGARIFTLNRPKVLNAINVDMIDSILPKLVSLEESNLAKVIILKGNG- 110

Query: 340 KAFCAGGDVKAAIDKIEGPRF------FHTEYNVNFLIGNYKIPYIAFINGITMGGGLGL 501
           ++F +GGD+KAA   I+  +       F  EY ++  +  Y+ P +A +NGITMGGG GL
Sbjct: 111 RSFSSGGDIKAAALSIQDGKLPEVRHAFAQEYRLSHTLATYQKPVVALMNGITMGGGSGL 170

Query: 502 SVHGRYRVATEKTLIAMPETKIGLFPDVGGSFFLPRLQVNLGLYLGLTGDRLKGKD 669
           ++H  +R+A E T+ AMPET IG F DV  SFF  RL    G YLGLT   +KG D
Sbjct: 171 AMHVPFRIACEDTMFAMPETGIGYFTDVAASFFFSRLPGYFGTYLGLTSQIVKGYD 226


>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +1

Query: 4   RPELLRIEYLKFNDTIRFTFNTTCCEEILKAYSLQMYSLIKLKQATLPLLR 156
           RP   R+ Y KF D      N  CC+ +   Y  +M    + +  TL L+R
Sbjct: 542 RPPAKRVNYQKFGDNFSEIGNPFCCDWV---YLNEMVKASRDEDKTLQLVR 589


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +1

Query: 247 SLNTSMVSKLLPQLQEWEKSKSLV 318
           +L++S +S+L PQL+EW  SK  V
Sbjct: 703 ALSSSPLSELHPQLREWFSSKQSV 726


>SPBC31F10.15c |atp15||F0-ATPase epsilon subunit|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 67

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = -3

Query: 712 FAWYKVXSYSSFXQRLYLSICHQSTLSTIPN*LVNEVK 599
           FAW K  SYS      Y SIC Q+    +   + NEVK
Sbjct: 3   FAWKKNFSYSK-----YASICSQTVRQALKPEIKNEVK 35


>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 563

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 142 LPLLRRTMS-SQEPDVLFEALNNAGIVTLNRPKALN 246
           LP++  T+  S  PDV+    N+AGI  L   + +N
Sbjct: 187 LPIIAATIQLSDLPDVILNFYNSAGITPLESSRLIN 222


>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/19 (63%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
 Frame = -1

Query: 414 FRMEEPRPF-DFVYGSFHI 361
           FRM+EP PF D VYG   I
Sbjct: 180 FRMKEPSPFTDLVYGKIAI 198


>SPAC637.07 |moe1||translation initiation factor eIF3d
           Moe1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 567

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -1

Query: 453 WDFIVSNQEINIVFRMEEPRPFDFV 379
           WD ++++Q   + F   E  PFD++
Sbjct: 280 WDIVITHQSGKLFFDKREGGPFDYL 304


>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +1

Query: 424 NFLIGNYKIPYIAFINGITMGGGLGLSVH-GRYRVATEKTLIAMPETKIGLFPDVGGSFF 600
           +F +G  ++PYI  + G+ +G G+ ++     YR    +     P+ +  L P + G F 
Sbjct: 399 HFSMGVAELPYIGLLVGVFIGSGINIAFEPWYYRKCLAQG--GKPDPEARLPPMMIGCFM 456

Query: 601 LP 606
            P
Sbjct: 457 FP 458


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +1

Query: 70  TCCEEILKAYSL--QMYSLIKLKQATLPLLRRTMSSQEPDVLFE 195
           T C +I+K      ++   IKLKQ  L  L R +    P  +FE
Sbjct: 237 TLCLKIIKGILTLDELQKAIKLKQTELDKLERRLYRPSPQNIFE 280


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -2

Query: 593 DPPTSGNSPILVSGMAINVFSVATLYLPWTESPRP 489
           DP    +SP+   G++IN  S    Y      P+P
Sbjct: 579 DPSAKASSPVTSKGVSINEKSAVNNYATPLSKPQP 613


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = +1

Query: 457 IAFINGI-TMGGGLGLS-VHGRYRVATEKTLIAMPETKIGLFPDVGGSFFLPRLQVN 621
           I+F+  I T+   L LS +  R+ ++TE+ LIAM    +    D+G S  +  L VN
Sbjct: 620 ISFVGAIETVDKALELSNLERRWPLSTEELLIAMNVDSMDTLSDIGQS-DIDNLSVN 675


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,059,235
Number of Sequences: 5004
Number of extensions: 65109
Number of successful extensions: 160
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)