Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0684
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32164| Best HMM Match : ECH (HMM E-Value=0.02)                      95   4e-20
SB_43237| Best HMM Match : No HMM Matches (HMM E-Value=.)              75   5e-14
SB_54248| Best HMM Match : ECH (HMM E-Value=6.6e-11)                   53   2e-07
SB_6823| Best HMM Match : No HMM Matches (HMM E-Value=.)               49   4e-06
SB_20977| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.007
SB_20978| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.33 
SB_31836| Best HMM Match : ECH (HMM E-Value=3.3e-06)                   31   0.76 
SB_15422| Best HMM Match : TACC (HMM E-Value=6.4e-20)                  31   1.3  
SB_44464| Best HMM Match : Adaptin_N (HMM E-Value=0)                   30   2.3  
SB_5862| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.0  
SB_28293| Best HMM Match : PRKCSH (HMM E-Value=5.9)                    29   4.0  
SB_14925| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  

>SB_32164| Best HMM Match : ECH (HMM E-Value=0.02)
          Length = 280

 Score = 95.5 bits (227), Expect = 4e-20
 Identities = 45/61 (73%), Positives = 49/61 (80%)
 Frame = +1

Query: 490 GLGLSVHGRYRVATEKTLIAMPETKIGLFPDVGGSFFLPRLQVNLGLYLGLTGDRLKGKD 669
           G+GLSVHGRYRVATEKT  AMPET IG FPDVGG+  LPRL   LGL+L LTG RLKG +
Sbjct: 122 GVGLSVHGRYRVATEKTTFAMPETAIGFFPDVGGAHALPRLSGKLGLFLALTGQRLKGYN 181

Query: 670 V 672
           V
Sbjct: 182 V 182



 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 22/37 (59%), Positives = 29/37 (78%)
 Frame = +1

Query: 181 DVLFEALNNAGIVTLNRPKALNSLNTSMVSKLLPQLQ 291
           + L E  NNAGI+T+NRPKALN+LN  M+ K+ PQL+
Sbjct: 85  EALLETKNNAGIITMNRPKALNALNLPMIRKIYPQLK 121


>SB_43237| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 311

 Score = 75.4 bits (177), Expect = 5e-14
 Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 4/154 (2%)
 Frame = +1

Query: 202 NNAGIVTLNRPKALNSLNTSMVSKLLPQLQEWEKSKSL--VIIKGAGEKAFCAGGDVKAA 375
           NN G + LNRPKALN+L   ++ +L   L  +E  K++  +++ G G +AF AG D+K  
Sbjct: 49  NNVGFIQLNRPKALNALCNDLMYELSDALDAFEADKNVGCIVLTGCG-RAFAAGADIKE- 106

Query: 376 IDKIEGPRFFHTEYNVNFL-IGNYKIPYIAFINGITMGGGLGLSVHGRYRVATEKTLIAM 552
           +  +   +    ++  ++  +     P IA +NG  +GGG  L++      A++K     
Sbjct: 107 MQPLTYQKCLSGDFLGHWTRVSKCTKPVIAAVNGFALGGGCELAMMCDIIYASDKAKFGQ 166

Query: 553 PETKIGLFPDVGGSFFLPR-LQVNLGLYLGLTGD 651
           PE  IG  P  GG+  L R +  +L + + LTGD
Sbjct: 167 PEILIGTIPGAGGTQRLTRAVGKSLAMEMVLTGD 200


>SB_54248| Best HMM Match : ECH (HMM E-Value=6.6e-11)
          Length = 230

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 32/76 (42%), Positives = 45/76 (59%), Gaps = 4/76 (5%)
 Frame = +1

Query: 451 PYIAFINGITMGGGLGLSVHGRYRVATE--KTLIAMPETKIGLFPDVGGSFFLPRLQVNL 624
           P +A I G  MGGGL L++   YR+A    KT+++ PE  +GL P  GG+  LPRL V L
Sbjct: 5   PVVAAIMGTCMGGGLELALSCHYRIAVNDGKTVLSAPEVMLGLLPGAGGTQRLPRL-VGL 63

Query: 625 --GLYLGLTGDRLKGK 666
              L + LTG  ++ +
Sbjct: 64  PDSLDMMLTGKNIRAQ 79


>SB_6823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 41/159 (25%), Positives = 76/159 (47%), Gaps = 5/159 (3%)
 Frame = +1

Query: 214 IVTLNRPKALNSLNTSMVSKLLPQLQEWE--KSKSLVIIKGAGEKAFCAGGDVK--AAID 381
           +V++ RP+  N++N+    +L    + +E   S ++ ++ G G   FCAG D++  A  D
Sbjct: 40  VVSIARPEKRNAINSETADQLSETFRHFEIDDSVNVAVLTGKGGN-FCAGSDLQELAQKD 98

Query: 382 KIEGPRFFHTEYNVNFLIGNYKIPYIAFINGITMGGGLGLSVHGRYRVATEKTLIAMPET 561
                + F+     +  +     P I  I G  +GGGL L++    RV  E ++      
Sbjct: 99  AETYMKSFYPPGEGDGPMAEANQPVIGAIQGYAVGGGLELALLCDLRVCEEDSVFGFFNR 158

Query: 562 KIGLFPDVGGSFFLPRL-QVNLGLYLGLTGDRLKGKDVV 675
           + G+    GG+  LP L  ++  L L +TG  +K ++ +
Sbjct: 159 RFGVPLVDGGAVRLPYLIGLSRALDLIMTGRAVKAQEAI 197


>SB_20977| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 240

 Score = 38.3 bits (85), Expect = 0.007
 Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 5/124 (4%)
 Frame = +1

Query: 217 VTLNRPKALNSLNTSMVSKLLPQLQEWEKSKSL--VIIKGAGEKAFCAGGDVKAAIDKIE 390
           +TL+R K +NS +   + ++   L++ E +     +I+  +  K F AG D+   + K +
Sbjct: 1   MTLSR-KPVNSFSLEFLEEIHDTLEDLESNTDCRGLIVTSSMPKVFSAGLDLVKELYKSD 59

Query: 391 GPR---FFHTEYNVNFLIGNYKIPYIAFINGITMGGGLGLSVHGRYRVATEKTLIAMPET 561
             R   F+    +V   +   ++  +A +NG  + GG  L+    YR+      I M ET
Sbjct: 60  EKRLFVFWRRFQDVWMQLYGSRLATVAAVNGHAVAGGCLLAAACDYRLMAANFTIGMNET 119

Query: 562 KIGL 573
            +G+
Sbjct: 120 IVGI 123


>SB_20978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1683

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
 Frame = +1

Query: 346  FCAGGDVKA--AIDKIEGPRFFHTEYNVNFLIGNYKIPYIAFINGITMGGGLGLSVHGRY 519
            FCAG D+K   A+ K +   F  T  ++   +   ++  +A I G  + GG  LS+   Y
Sbjct: 1478 FCAGLDLKEVLALRKSKLVTFRKTFQDMWSRLYGSRLVTMAAIKGHAIAGGCVLSLACDY 1537

Query: 520  RVATEKTLIAMPETKIGLF 576
             V      I +PE  +GL+
Sbjct: 1538 SVMASDFRIGLPELSLGLY 1556


>SB_31836| Best HMM Match : ECH (HMM E-Value=3.3e-06)
          Length = 149

 Score = 31.5 bits (68), Expect = 0.76
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +1

Query: 451 PYIAFINGITMGGGLGLSVHGRYRVATEKTLIAMPETKIGLFPDVGGSFFLPRLQVN-LG 627
           P IA ++   +GGG+ +      R+ T      + E ++GL  DVG    +P++  N  G
Sbjct: 41  PVIAAVHSACVGGGVDMICACDIRLCTSDAWFQVKEVELGLAADVGTLQRMPKIVGNESG 100

Query: 628 LY 633
           +Y
Sbjct: 101 IY 102


>SB_15422| Best HMM Match : TACC (HMM E-Value=6.4e-20)
          Length = 1362

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 498 SKTSSHCDSIYKCDIWDFIVSNQEINIVFRMEEPRPFDFVYGS 370
           S +S+H   +Y   IW  ++S+QEIN      +    DF Y S
Sbjct: 851 SSSSAHNLQMYALTIWRAVISDQEINDFMNTVDRGVDDFYYNS 893


>SB_44464| Best HMM Match : Adaptin_N (HMM E-Value=0)
          Length = 596

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +1

Query: 127 LKQATLPLLRRTMSSQEPDVLFEALNNAGIVTLNRPKALNS 249
           LK+   PL+  T+ S EP+V + AL N  ++   RP+ L +
Sbjct: 260 LKKLAPPLV--TLLSSEPEVQYVALRNINLIVQKRPEILKN 298


>SB_5862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2353

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = -2

Query: 584 TSGNSPILVSGMAINVFSVATLYLPWTESPRPPPIVIPF-----INAIYGIL 444
           T  + P +VS   +   +  ++ + WT  P+P  ++I +     +N  YGIL
Sbjct: 582 TGQSRPTVVSPPGLEALNSTSIRVTWTTPPKPNGVIIAYNVTQVVNGSYGIL 633


>SB_28293| Best HMM Match : PRKCSH (HMM E-Value=5.9)
          Length = 136

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 453 IYRIYKWNHNGRRSWTLSPWQIQSSNREDINSHARD*DRTI 575
           +YR+Y  N     SW+   W+ ++    +INS +    R I
Sbjct: 91  VYRLYLQNPQNMGSWSSKRWKDKAGEENNINSKSSTFSRVI 131


>SB_14925| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 367

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +1

Query: 397 RFFHTEYNVNFLIGNYKIPYIAFINGITMGGG 492
           RF H+   + +++GN+  PY+A  +  + GGG
Sbjct: 191 RFPHSLDGMFYIVGNHGYPYLAHCDMTSFGGG 222


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,188,242
Number of Sequences: 59808
Number of extensions: 469578
Number of successful extensions: 1190
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1188
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)