Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0683
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    28   1.1  
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces...    27   2.5  
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch...    26   4.4  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   4.4  
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    25   7.6  

>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = +1

Query: 28  ATQITFPQTTAA--PKVNKKQGLVELYNNEGQS-TAGYNLQNDNRSFKVRNGFNVDEAPR 198
           +T  +FP ++    P  N +   VE  N      T+ +NL    +SF  RNG  V E+  
Sbjct: 253 STNYSFPSSSLEDQPDKNVQSSAVENKNKHTNLVTSSFNLTKPMKSFIRRNGLRVQESVT 312

Query: 199 D 201
           D
Sbjct: 313 D 313


>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
 Frame = -3

Query: 316 CTVVYSGQHFVH-----YYSWMQWFGCFDCCNFH 230
           C V +  +  VH     Y SWMQ F C  C + H
Sbjct: 263 CQVSFKVERLVHKELNEYLSWMQPFTCDSCGSLH 296


>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 587

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = +1

Query: 31  TQITFPQTTAAPKVNKKQGLVELYNN---EGQSTAGYNLQNDNRSFKVRNG 174
           T+  +P T  + K+   + L   Y++   +G++T   +  +DN +F++ NG
Sbjct: 482 TKSGYPATLGSKKITNVRDLTTGYDSSSTDGKATLPVSKSSDNVTFELENG 532


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 352  FFRVHKARCYNFCTVVYSGQH 290
            FF+ H +   NFCT V +  H
Sbjct: 3845 FFKTHASNIQNFCTEVLANTH 3865


>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 517 NYDESGEDDGQYRPPQGEDDGLYRPELYDREL 612
           +Y ++ E+DGQ  P    +D LY   +  REL
Sbjct: 136 SYLKAVENDGQSEPVNVNEDYLYSVNVVSREL 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.307    0.128    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,470,771
Number of Sequences: 5004
Number of extensions: 45883
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)