Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0683
         (678 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1486 + 26899479-26899549,26899861-26899989,26900649-269008...    30   1.5  
02_05_1213 - 34963971-34964658,34965030-34965270,34965347-349657...    30   1.5  
12_01_0312 + 2349696-2350424                                           29   3.4  
01_01_0962 + 7570490-7570796,7571984-7572540,7572702-7572749,757...    29   3.4  

>07_03_1486 + 26899479-26899549,26899861-26899989,26900649-26900834,
            26901025-26901247,26901662-26901666,26901796-26901924,
            26902697-26902894,26903138-26903356,26903461-26903699,
            26903797-26903888,26904009-26904224,26904327-26904554,
            26904631-26904722,26904806-26904899,26905475-26905567,
            26905667-26906640,26906727-26906841,26907135-26908895
          Length = 1687

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +1

Query: 508  PANNYDESGEDDGQYRPPQGEDDGLYRPELYDRELLSGAHSLNIAASGNRL 660
            P  +YD S  + G Y   Q +D  LY  E   + L   AH LN A +   +
Sbjct: 1445 PEFSYDMSWLNKGSYMGSQIQDQKLYLEECLTKYLTKSAHLLNEAQAATEV 1495


>02_05_1213 -
           34963971-34964658,34965030-34965270,34965347-34965736,
           34966515-34966781,34966881-34967249,34967931-34968014,
           34968113-34968226,34969952-34970018
          Length = 739

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = +2

Query: 287 EMLSRIHHR--TKIITACLMNPKKITSYRILK 376
           EMLSR+HHR   K+I  C+ + K+   Y +++
Sbjct: 390 EMLSRLHHRNLVKLIGICIEHNKRCLVYELIR 421


>12_01_0312 + 2349696-2350424
          Length = 242

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -3

Query: 316 CTVVYSGQHFVHYYSWMQWFGCFDCC 239
           C +  +G H  H++   +W GC + C
Sbjct: 199 CAIPCAGNHSFHHHCITEWLGCSNVC 224


>01_01_0962 +
           7570490-7570796,7571984-7572540,7572702-7572749,
           7572841-7573789,7574573-7575528
          Length = 938

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +1

Query: 487 TNIGFNAPANNYDESGEDDGQYRPPQGEDDGLYRPELYDRELLSGAHSLNIAASGNR 657
           TN+ F      + ES E +G  R  + ++DG     + +R LL+  +S N  AS  R
Sbjct: 515 TNVHFENSEGCFRESPESNGSQRVHEVDNDGNKVSIMSERHLLADDNSQNNGASVGR 571


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.307    0.128    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,798,769
Number of Sequences: 37544
Number of extensions: 294848
Number of successful extensions: 553
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)