BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0683 (678 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 07_03_1486 + 26899479-26899549,26899861-26899989,26900649-269008... 30 1.5 02_05_1213 - 34963971-34964658,34965030-34965270,34965347-349657... 30 1.5 12_01_0312 + 2349696-2350424 29 3.4 01_01_0962 + 7570490-7570796,7571984-7572540,7572702-7572749,757... 29 3.4 >07_03_1486 + 26899479-26899549,26899861-26899989,26900649-26900834, 26901025-26901247,26901662-26901666,26901796-26901924, 26902697-26902894,26903138-26903356,26903461-26903699, 26903797-26903888,26904009-26904224,26904327-26904554, 26904631-26904722,26904806-26904899,26905475-26905567, 26905667-26906640,26906727-26906841,26907135-26908895 Length = 1687 Score = 30.3 bits (65), Expect = 1.5 Identities = 17/51 (33%), Positives = 23/51 (45%) Frame = +1 Query: 508 PANNYDESGEDDGQYRPPQGEDDGLYRPELYDRELLSGAHSLNIAASGNRL 660 P +YD S + G Y Q +D LY E + L AH LN A + + Sbjct: 1445 PEFSYDMSWLNKGSYMGSQIQDQKLYLEECLTKYLTKSAHLLNEAQAATEV 1495 >02_05_1213 - 34963971-34964658,34965030-34965270,34965347-34965736, 34966515-34966781,34966881-34967249,34967931-34968014, 34968113-34968226,34969952-34970018 Length = 739 Score = 30.3 bits (65), Expect = 1.5 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 2/32 (6%) Frame = +2 Query: 287 EMLSRIHHR--TKIITACLMNPKKITSYRILK 376 EMLSR+HHR K+I C+ + K+ Y +++ Sbjct: 390 EMLSRLHHRNLVKLIGICIEHNKRCLVYELIR 421 >12_01_0312 + 2349696-2350424 Length = 242 Score = 29.1 bits (62), Expect = 3.4 Identities = 8/26 (30%), Positives = 14/26 (53%) Frame = -3 Query: 316 CTVVYSGQHFVHYYSWMQWFGCFDCC 239 C + +G H H++ +W GC + C Sbjct: 199 CAIPCAGNHSFHHHCITEWLGCSNVC 224 >01_01_0962 + 7570490-7570796,7571984-7572540,7572702-7572749, 7572841-7573789,7574573-7575528 Length = 938 Score = 29.1 bits (62), Expect = 3.4 Identities = 18/57 (31%), Positives = 28/57 (49%) Frame = +1 Query: 487 TNIGFNAPANNYDESGEDDGQYRPPQGEDDGLYRPELYDRELLSGAHSLNIAASGNR 657 TN+ F + ES E +G R + ++DG + +R LL+ +S N AS R Sbjct: 515 TNVHFENSEGCFRESPESNGSQRVHEVDNDGNKVSIMSERHLLADDNSQNNGASVGR 571 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.307 0.128 0.370 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,798,769 Number of Sequences: 37544 Number of extensions: 294848 Number of successful extensions: 553 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 547 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 553 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1726796312 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.1 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 42 (21.6 bits)
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