Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0683
         (678 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42232| Best HMM Match : zf-C2HC (HMM E-Value=8.3)                   29   3.5  
SB_38380| Best HMM Match : PIR (HMM E-Value=0.56)                      29   3.5  
SB_46065| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_8394| Best HMM Match : zf-C3HC4 (HMM E-Value=8.6e-08)               29   4.6  
SB_22085| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_42232| Best HMM Match : zf-C2HC (HMM E-Value=8.3)
          Length = 123

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = -3

Query: 316 CTVVYSGQHFVHYYS-WMQWFGC 251
           CT +Y   H VHYY    ++FGC
Sbjct: 43  CTGLYHSDHIVHYYQRTREFFGC 65


>SB_38380| Best HMM Match : PIR (HMM E-Value=0.56)
          Length = 339

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = -3

Query: 316 CTVVYSGQHFVHYYS-WMQWFGC 251
           CT +Y   H VHYY    ++FGC
Sbjct: 43  CTGLYHSDHIVHYYQRTREFFGC 65


>SB_46065| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +1

Query: 511 ANNYDESGEDDGQYRPPQGEDDGLYRPEL-YDRELLSGAHSLNIAASGN 654
           ANN   SG+DDG       +DDG  +  L  D EL   A  L  A  GN
Sbjct: 14  ANNNTNSGDDDGDDNDNDDDDDGASQDILTSDSELAEWAKDL--AQEGN 60


>SB_8394| Best HMM Match : zf-C3HC4 (HMM E-Value=8.6e-08)
          Length = 1631

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +1

Query: 448  PEPPANLNKVAYNTNIGFNAPANNYDESGEDDGQYRPPQGEDDG 579
            P P +++  V+     G   P N++   GED  +Y   +G+  G
Sbjct: 1018 PSPCSSIEDVSSPRMTGRKTPLNDFTSGGEDASEYSGKRGKKKG 1061


>SB_22085| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 238

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 76  KKQGLVELYNNEGQSTAGYNLQNDNRSFKVRNGFNV 183
           KK  L      +G+ ++G NL N+NR    R+ FN+
Sbjct: 25  KKFRLANRAGQKGRESSGRNLANNNRRRSARHIFNI 60


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.307    0.128    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,586,299
Number of Sequences: 59808
Number of extensions: 356115
Number of successful extensions: 1027
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)