Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0683
         (678 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-26|CAE18029.1|  377|Caenorhabditis elegans Hypothetical p...    28   5.3  
AC024801-8|AAK95893.1|  285|Caenorhabditis elegans Hypothetical ...    27   9.3  

>Z99281-26|CAE18029.1|  377|Caenorhabditis elegans Hypothetical
           protein Y57G11C.46 protein.
          Length = 377

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 661 AICYHWLQYSKNALQTEAL 605
           +ICYHW  +SKN + T  +
Sbjct: 181 SICYHWSDFSKNRVCTHCI 199


>AC024801-8|AAK95893.1|  285|Caenorhabditis elegans Hypothetical
           protein Y50D7A.9 protein.
          Length = 285

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 675 FSFFRQSVTTGCNIQRMRSRQKLSVIQ-LRSIQAVVF 568
           FS  R+  TTG  +Q+++  QKL   Q  R++   VF
Sbjct: 2   FSPLRRLTTTGLQLQKLQKLQKLQQFQPARAVHLTVF 38


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.307    0.128    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,878,806
Number of Sequences: 27780
Number of extensions: 268160
Number of successful extensions: 690
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)