Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0683
         (678 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    23   2.7  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              22   4.7  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   6.2  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    22   6.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.2  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   8.2  

>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 319 NYNSVPYEPEKNNVVPYSKTNYFN 390
           NYN   Y    NN   Y+K  Y+N
Sbjct: 88  NYNYSNYNNYNNNYNNYNKKLYYN 111


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
 Frame = +1

Query: 37  ITFPQTTAAPKVNKKQGLVE--LYNNEGQSTAGY 132
           +T P+TT   K NKK    E     N G+  A Y
Sbjct: 20  VTMPETTPRRKKNKKPLPTECVFCRNNGEEEAYY 53


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = +1

Query: 70  VNKKQGLVELYNNEGQSTAGYNLQNDNRSFKVRN 171
           +NK+Q +++L     Q      LQN   S+ + +
Sbjct: 30  LNKQQDVIQLLQKISQPIPNQELQNLGASYDIES 63


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 268 MQWFGCFDCCNF 233
           M+ FGCF+ C F
Sbjct: 49  MKKFGCFEACVF 60


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 611  SSLSYNSGLYKPSSSPC 561
            SS  Y+S LYK S S C
Sbjct: 955  SSSFYSSFLYKSSESSC 971


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 463 NLNKVAYNTNIGFNAPANNYDE 528
           N N   YN N  +N   NNY++
Sbjct: 92  NNNNYKYNYNNKYNYNNNNYNK 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.307    0.128    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,753
Number of Sequences: 438
Number of extensions: 3815
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)