Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0683
         (678 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16140.1 68417.m02445 proline-rich family protein contains pr...    29   3.7  
At3g28770.1 68416.m03591 expressed protein                             28   6.5  
At2g19060.1 68415.m02226 GDSL-motif lipase/hydrolase family prot...    28   6.5  

>At4g16140.1 68417.m02445 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 164

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 316 KNYNSVPYEPEKNNVVPYSKTNYFNSP 396
           K+  + PY P  N +VPY    Y+N P
Sbjct: 107 KSGGNYPYTPPPNPIVPYFPFYYYNPP 133


>At3g28770.1 68416.m03591 expressed protein 
          Length = 2081

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = +1

Query: 19  NSKATQITFPQTTAAPKVNKKQGLVELYNNEGQSTAGYNLQNDNRSFKVRNGFNVD 186
           + ++T       T   + +KK+   E + N G+S  G NL+N   + +   G N++
Sbjct: 397 SGESTNDKMVNATTNDEDHKKENKEETHENNGESVKGENLENKAGNEESMKGENLE 452


>At2g19060.1 68415.m02226 GDSL-motif lipase/hydrolase family protein
           similar to family II lipases EXL6 GI:15054390, EXL1
           GI:15054382, EXL2 GI:15054384 from [Arabidopsis
           thaliana]; contains Pfam profile PF00657: GDSL-like
           Lipase/Acylhydrolase
          Length = 349

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +1

Query: 454 PPANLNKVAYNTNIGFNAPANNY 522
           PP  L K  Y  NIG N   NNY
Sbjct: 145 PPEKLKKCLYTINIGSNDYLNNY 167


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.307    0.128    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,838,861
Number of Sequences: 28952
Number of extensions: 242118
Number of successful extensions: 485
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)