Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0681
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi...   108   7e-25
SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase Gpd1|Schizo...   105   5e-24
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    27   2.6  
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    26   4.6  
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    26   4.6  
SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|...    26   6.1  

>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
           Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score =  108 bits (260), Expect = 7e-25
 Identities = 51/89 (57%), Positives = 65/89 (73%)
 Frame = +1

Query: 7   ESCGVADLITTCYGGRNRRVAEAFVKTGRSIKELEDEMLNGQKLQGPITAEEVNHMLANK 186
           ESCG+ADLITTC GGRN + A AFVKTG+ +  +E E+L+GQKLQG  TA+EV   L N+
Sbjct: 285 ESCGIADLITTCLGGRNHKCAVAFVKTGKPMHVVEQELLDGQKLQGAATAKEVYEFLDNQ 344

Query: 187 NMENKFPLFTAVFRICRGELKPNDFIDCI 273
           N  ++FPLFTAV+RI    L PN  ++ I
Sbjct: 345 NKVSEFPLFTAVYRIVYEGLPPNKLLEAI 373


>SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase
           Gpd1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 385

 Score =  105 bits (253), Expect = 5e-24
 Identities = 47/86 (54%), Positives = 63/86 (73%)
 Frame = +1

Query: 7   ESCGVADLITTCYGGRNRRVAEAFVKTGRSIKELEDEMLNGQKLQGPITAEEVNHMLANK 186
           +SCG+ADL+T+C GGRN R AEAFVKTG+S++ LE E+L GQ LQG  T+++V+  L  K
Sbjct: 281 QSCGIADLVTSCLGGRNNRCAEAFVKTGKSLETLEKELLGGQLLQGAATSKDVHEFLLTK 340

Query: 187 NMENKFPLFTAVFRICRGELKPNDFI 264
           +M   FPLFTAV+ I   ++ P D I
Sbjct: 341 DMVKDFPLFTAVYNISYEDMDPKDLI 366


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
            Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 167  TICSLIKIWKTSSLCSLRC 223
            TIC L+ IW+  S C LRC
Sbjct: 1053 TICMLLSIWEAMS-CPLRC 1070


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
 Frame = -1

Query: 572 LIGNKKS*SQMYKSNKMIR---ASSMQ*FKMGHLTCYDMFSVKRAVIYFFKTVFLAACT 405
           +IG +    ++ K+NK I    A S+  F + HLT    F V  +V  F+KT+F++ CT
Sbjct: 383 IIGKRFGKHRISKTNKSIEGVFAFSISVFLVLHLT--QAFHVCPSVT-FWKTLFMSLCT 438


>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 163 VNHMLANKNMENKFPLFTAVF 225
           VNH L  KN+ +KFP   +V+
Sbjct: 284 VNHQLPTKNLLSKFPNLASVY 304


>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 272

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 192 GKQVPFVHCGVPHLSRRTQTER 257
           GKQ P+  C V  + +RTQT++
Sbjct: 26  GKQSPYCVCRVGEVVKRTQTDK 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,773,646
Number of Sequences: 5004
Number of extensions: 53556
Number of successful extensions: 108
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)