BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0681 (710 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi... 108 7e-25 SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase Gpd1|Schizo... 105 5e-24 SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 27 2.6 SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||... 26 4.6 SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar... 26 4.6 SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|... 26 6.1 >SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schizosaccharomyces pombe|chr 1|||Manual Length = 373 Score = 108 bits (260), Expect = 7e-25 Identities = 51/89 (57%), Positives = 65/89 (73%) Frame = +1 Query: 7 ESCGVADLITTCYGGRNRRVAEAFVKTGRSIKELEDEMLNGQKLQGPITAEEVNHMLANK 186 ESCG+ADLITTC GGRN + A AFVKTG+ + +E E+L+GQKLQG TA+EV L N+ Sbjct: 285 ESCGIADLITTCLGGRNHKCAVAFVKTGKPMHVVEQELLDGQKLQGAATAKEVYEFLDNQ 344 Query: 187 NMENKFPLFTAVFRICRGELKPNDFIDCI 273 N ++FPLFTAV+RI L PN ++ I Sbjct: 345 NKVSEFPLFTAVYRIVYEGLPPNKLLEAI 373 >SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase Gpd1|Schizosaccharomyces pombe|chr 2|||Manual Length = 385 Score = 105 bits (253), Expect = 5e-24 Identities = 47/86 (54%), Positives = 63/86 (73%) Frame = +1 Query: 7 ESCGVADLITTCYGGRNRRVAEAFVKTGRSIKELEDEMLNGQKLQGPITAEEVNHMLANK 186 +SCG+ADL+T+C GGRN R AEAFVKTG+S++ LE E+L GQ LQG T+++V+ L K Sbjct: 281 QSCGIADLVTSCLGGRNNRCAEAFVKTGKSLETLEKELLGGQLLQGAATSKDVHEFLLTK 340 Query: 187 NMENKFPLFTAVFRICRGELKPNDFI 264 +M FPLFTAV+ I ++ P D I Sbjct: 341 DMVKDFPLFTAVYNISYEDMDPKDLI 366 >SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosaccharomyces pombe|chr 3|||Manual Length = 1140 Score = 27.1 bits (57), Expect = 2.6 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = +2 Query: 167 TICSLIKIWKTSSLCSLRC 223 TIC L+ IW+ S C LRC Sbjct: 1053 TICMLLSIWEAMS-CPLRC 1070 >SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3|||Manual Length = 465 Score = 26.2 bits (55), Expect = 4.6 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 3/59 (5%) Frame = -1 Query: 572 LIGNKKS*SQMYKSNKMIR---ASSMQ*FKMGHLTCYDMFSVKRAVIYFFKTVFLAACT 405 +IG + ++ K+NK I A S+ F + HLT F V +V F+KT+F++ CT Sbjct: 383 IIGKRFGKHRISKTNKSIEGVFAFSISVFLVLHLT--QAFHVCPSVT-FWKTLFMSLCT 438 >SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosaccharomyces pombe|chr 1|||Manual Length = 423 Score = 26.2 bits (55), Expect = 4.6 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = +1 Query: 163 VNHMLANKNMENKFPLFTAVF 225 VNH L KN+ +KFP +V+ Sbjct: 284 VNHQLPTKNLLSKFPNLASVY 304 >SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 272 Score = 25.8 bits (54), Expect = 6.1 Identities = 10/22 (45%), Positives = 15/22 (68%) Frame = +3 Query: 192 GKQVPFVHCGVPHLSRRTQTER 257 GKQ P+ C V + +RTQT++ Sbjct: 26 GKQSPYCVCRVGEVVKRTQTDK 47 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,773,646 Number of Sequences: 5004 Number of extensions: 53556 Number of successful extensions: 108 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 108 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 108 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 331187010 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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