Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0681
         (710 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0341 - 42855667-42855849,42855933-42855981,42856165-428562...   110   1e-24
03_05_0590 - 25922905-25923008,25923637-25924594                       30   2.1  
05_01_0432 + 3428920-3428934,3429007-3429111,3429341-3429397,342...    29   4.8  

>01_07_0341 -
           42855667-42855849,42855933-42855981,42856165-42856219,
           42856290-42856410,42856495-42856532,42856612-42856675,
           42856778-42856885,42857066-42857187,42857544-42857616,
           42857700-42857776,42858521-42858632
          Length = 333

 Score =  110 bits (264), Expect = 1e-24
 Identities = 54/91 (59%), Positives = 64/91 (70%), Gaps = 2/91 (2%)
 Frame = +1

Query: 1   FFESCGVADLITTCYGGRNRRVAEAFVKTG--RSIKELEDEMLNGQKLQGPITAEEVNHM 174
           FFESCGVADLITTC GGRNRRVAEAF + G  RS  ELE EML+GQKLQG  TA+EV  +
Sbjct: 225 FFESCGVADLITTCLGGRNRRVAEAFARNGGKRSFDELEAEMLHGQKLQGVSTAKEVYEV 284

Query: 175 LANKNMENKFPLFTAVFRICRGELKPNDFID 267
           L  +  +  FPL + V  IC G+L P   ++
Sbjct: 285 LTYRGWQELFPLLSTVHEICIGQLPPTSIVE 315


>03_05_0590 - 25922905-25923008,25923637-25924594
          Length = 353

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 19/55 (34%), Positives = 23/55 (41%)
 Frame = +1

Query: 112 DEMLNGQKLQGPITAEEVNHMLANKNMENKFPLFTAVFRICRGELKPNDFIDCIR 276
           DE+L G +   P  A        NK     +PL  AVF     +LK  DFI   R
Sbjct: 24  DEVLFGSEYTFPANAPTA---FTNKQSGRPYPLSAAVFLAQHNDLKHTDFIQAAR 75


>05_01_0432 +
           3428920-3428934,3429007-3429111,3429341-3429397,
           3429499-3429702,3429790-3429849,3430797-3430923,
           3431420-3431520
          Length = 222

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/31 (58%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -1

Query: 497 FKMGHLTCYDMFS--VKRAVIYFFKTVFLAA 411
           FK G L  Y +FS  VK  VI F  TVFLAA
Sbjct: 58  FKAGALVFYILFSLFVKSFVIIFVITVFLAA 88


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,128,793
Number of Sequences: 37544
Number of extensions: 345937
Number of successful extensions: 694
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)