Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0681
         (710 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50623| Best HMM Match : NAD_Gly3P_dh_C (HMM E-Value=0)              85   4e-17
SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.40 
SB_1687| Best HMM Match : LRR_2 (HMM E-Value=4.6e-07)                  31   0.70 
SB_53243| Best HMM Match : Sec34 (HMM E-Value=9.9e-05)                 29   4.9  

>SB_50623| Best HMM Match : NAD_Gly3P_dh_C (HMM E-Value=0)
          Length = 358

 Score = 85.4 bits (202), Expect = 4e-17
 Identities = 38/64 (59%), Positives = 47/64 (73%)
 Frame = +1

Query: 1   FFESCGVADLITTCYGGRNRRVAEAFVKTGRSIKELEDEMLNGQKLQGPITAEEVNHMLA 180
           F+ESCGVADLITTCY GRNR   E F+K+ +S  ++E E+L GQKLQGP TA EV  +L 
Sbjct: 292 FYESCGVADLITTCYAGRNRLAGEEFIKSKKSFDQVEQEILGGQKLQGPHTAYEVYQVLK 351

Query: 181 NKNM 192
             N+
Sbjct: 352 ENNL 355


>SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4247

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = +1

Query: 112  DEMLNGQKLQGPITAEEVNHMLANKNMENKFPLFTAVFRICRGELKPNDFIDCIRSHPEH 291
            +  L    L+  ITAE ++ +L     EN  P FTA+   C  E++        R HP+H
Sbjct: 981  ESSLESLGLRDNITAEALSSLLKMTEFENLVPRFTAIVPPCWSEVQQE---QQQRRHPQH 1037

Query: 292  M 294
            +
Sbjct: 1038 L 1038


>SB_1687| Best HMM Match : LRR_2 (HMM E-Value=4.6e-07)
          Length = 483

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +1

Query: 148 ITAEEVNHMLANKNM---ENKFPLFTAVFRICRGELKPNDFIDCIRSHPEHMKLPLVKCS 318
           +T EE  H+     M   E++ PL   +   CR +L   DF+   +S P   KL L  CS
Sbjct: 126 LTFEETKHLTLGCFMSIIESRCPLLKELSLKCRSDLCSLDFLTMAKSSPLLQKLSLAFCS 185


>SB_53243| Best HMM Match : Sec34 (HMM E-Value=9.9e-05)
          Length = 530

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 151 TAEEVNHMLANKNMENKFPLFTAVFRICRGELKPNDFIDCIRSHP 285
           T++ +N+  A  N EN F LF   FR C   +K +  +  +  HP
Sbjct: 67  TSQVLNNKDAG-NAENSFALFYGKFRTCAPRIKVSGTVSPLFCHP 110


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,455,560
Number of Sequences: 59808
Number of extensions: 430925
Number of successful extensions: 878
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)