Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0681
         (710 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40610.1 68418.m04930 glycerol-3-phosphate dehydrogenase [NAD...   105   2e-23
At2g40690.1 68415.m05020 NAD-dependent glycerol-3-phosphate dehy...    31   0.75 
At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKL...    29   2.3  
At2g45700.1 68415.m05682 sterile alpha motif (SAM) domain-contai...    29   3.0  

>At5g40610.1 68418.m04930 glycerol-3-phosphate dehydrogenase [NAD+]
           / GPDH strong similarity to  SP|P52425
           Glycerol-3-phosphate dehydrogenase [NAD+] (EC 1.1.1.8)
           {Cuphea lanceolata}; contains Pfam profile PF01210:
           NAD-dependent glycerol-3-phosphate dehydrogenase
          Length = 400

 Score =  105 bits (253), Expect = 2e-23
 Identities = 54/90 (60%), Positives = 62/90 (68%), Gaps = 2/90 (2%)
 Frame = +1

Query: 1   FFESCGVADLITTCYGGRNRRVAEAFVKT--GRSIKELEDEMLNGQKLQGPITAEEVNHM 174
           FFESCGVAD+ITTC GGRNRRVAEAF K+   RS  ELE EML GQKLQG  TA EV  +
Sbjct: 304 FFESCGVADVITTCLGGRNRRVAEAFAKSRGKRSFDELEAEMLQGQKLQGVSTAREVYEV 363

Query: 175 LANKNMENKFPLFTAVFRICRGELKPNDFI 264
           L +      FPLF+ V +IC G L+P   +
Sbjct: 364 LKHCGWLEMFPLFSTVHQICTGRLQPEAIV 393


>At2g40690.1 68415.m05020 NAD-dependent glycerol-3-phosphate
           dehydrogenase family protein low similarity to SP|Q26756
           Glycerol-3-phosphate dehydrogenase [NAD+], glycosomal
           (EC 1.1.1.8) {Trypanosoma brucei rhodesiense}; contains
           Pfam profile PF01210: NAD-dependent glycerol-3-phosphate
           dehydrogenase
          Length = 420

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = +1

Query: 16  GVADLITTCYGGRNR-RVAEAFVKTGRSIKELEDEMLNGQKLQGPITAEEVNHMLANKNM 192
           G  D++ TC+   +R R     + +G ++ ++   M   Q  +G  TA  V  +    N+
Sbjct: 329 GTGDIMLTCFVNLSRNRTVGVRLGSGETLDDILTSM--NQVAEGVATAGAVIALAQKYNV 386

Query: 193 ENKFPLFTAVFRICRGELKP 252
             K P+ TAV +I   EL P
Sbjct: 387 --KLPVLTAVAKIIDNELTP 404


>At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKLE)
            identical to chromatin remodeling factor CHD3
            [Arabidopsis thaliana] GI:6478518
          Length = 1384

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 88   GRSIKELEDEMLNGQKLQGPITAEEVNHMLANKN 189
            G S  E++DEML+G     PIT+EE+     + N
Sbjct: 1220 GVSFIEVDDEMLDGLPKTDPITSEEIMGAAVDNN 1253


>At2g45700.1 68415.m05682 sterile alpha motif (SAM)
           domain-containing protein similar to SNM1 protein [Mus
           musculus] GI:7595835; contains Pfam profile PF00536: SAM
           domain (Sterile alpha motif)
          Length = 723

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/56 (25%), Positives = 24/56 (42%)
 Frame = -3

Query: 429 NCVLSCVYKINAFCGIADDKCRWSEETLSRGSSVGSQ*TFDQGQFHVFRVTANAIN 262
           NC+    ++++AF  +  D C W           G   +F  G+ +   VTA  +N
Sbjct: 396 NCIPGTPFRVDAFKYLTRDCCHWFLTHFHLDHYQGLTKSFSHGKIYCSLVTAKLVN 451


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,620,931
Number of Sequences: 28952
Number of extensions: 282703
Number of successful extensions: 612
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)