Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0680
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.      29   3.2  
AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor o...    29   3.2  
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p...    27   9.8  
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep...    27   9.8  

>AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.
          Length = 1475

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -1

Query: 97  KRGKGEGKVARASFVGRQGAPRAGEVGFG 11
           K+G+G G V  A+  GR+ A  AGE  FG
Sbjct: 717 KKGRGAGAVGAAAAGGRKSAGGAGENPFG 745


>AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor of
           pal-1 protein 3,isoform a protein.
          Length = 1475

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -1

Query: 97  KRGKGEGKVARASFVGRQGAPRAGEVGFG 11
           K+G+G G V  A+  GR+ A  AGE  FG
Sbjct: 717 KKGRGAGAVGAAAAGGRKSAGGAGENPFG 745


>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
            protein 68 protein.
          Length = 5079

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = +1

Query: 568  QRY-EIRRTFV--SEKARRTERVYLPPKTHLFRCYECNWESE 684
            +RY EI++T +  +E A++T+    PPK  +FR   C  + E
Sbjct: 1927 KRYMEIKQTDMPPAEAAKKTKEFRCPPKEQMFRLLMCKVKEE 1968


>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
            protein.
          Length = 5071

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = +1

Query: 568  QRY-EIRRTFV--SEKARRTERVYLPPKTHLFRCYECNWESE 684
            +RY EI++T +  +E A++T+    PPK  +FR   C  + E
Sbjct: 2048 KRYMEIKQTDMPPAEAAKKTKEFRCPPKEQMFRLLMCKVKEE 2089


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,962,917
Number of Sequences: 27780
Number of extensions: 214943
Number of successful extensions: 470
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)