Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0680
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   4.9  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   4.9  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   4.9  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   6.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   6.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   8.5  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -1

Query: 121 IWIKENRRKRGKGEGKVARASFVGRQGAPRAG 26
           IW+ +  R R KG+G        G  G PR G
Sbjct: 131 IWVPQKYRLRHKGDGS------PGGNGGPRNG 156


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +1

Query: 610 RRTERVYLPPKTHLFRCYECNWESE 684
           +  +R+YL P+T +   Y+ N E++
Sbjct: 20  KNDKRIYLSPRTPIKNVYKNNIETK 44


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -1

Query: 121 IWIKENRRKRGKGEGKVARASFVGRQGAPRAG 26
           IW+ +  R R KG+G        G  G PR G
Sbjct: 131 IWVPQKYRLRHKGDGS------PGGNGGPRNG 156


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 563 QGSDMRFVAHLFLKKRGERNVCI 631
           +GS   +   +F ++  ERNVCI
Sbjct: 147 EGSYGEYGIEVFTREATERNVCI 169


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 563 QGSDMRFVAHLFLKKRGERNVCI 631
           +GS   +   +F ++  ERNVCI
Sbjct: 237 EGSYGEYGIEVFTREATERNVCI 259


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 195 LSSQPHPTLLPRIVGYD*QNVLRS 266
           L   P  +LLP  VGY  +++ +S
Sbjct: 393 LEDAPQNSLLPNFVGYKGKHIGKS 416


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,455
Number of Sequences: 438
Number of extensions: 2935
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)