Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0679
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0438 - 17737040-17737122,17737373-17737496,17737897-177381...    29   3.5  
04_04_1434 - 33568258-33569415                                         29   3.5  
07_03_0375 + 17408815-17409035,17422820-17423477,17423780-174241...    28   8.2  

>11_04_0438 -
           17737040-17737122,17737373-17737496,17737897-17738182,
           17738265-17738397,17738742-17738953,17739455-17739816,
           17739907-17739937,17744738-17745111
          Length = 534

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/63 (23%), Positives = 32/63 (50%)
 Frame = -2

Query: 402 RIKFQNRARNVQNDVND*TNKVHSSV*LFHSEIRNELTERTCRRMSYAYVSHGVTATAAF 223
           +I+ QNR+RN+    +   + V  +  L + E + E     CRR+ +A+    + A+ + 
Sbjct: 135 KIEIQNRSRNLTVYASKVVDSVAYNAMLSYPEGQQEKCVAVCRRLEHAHALFDILASCSH 194

Query: 222 RSV 214
            ++
Sbjct: 195 SNI 197


>04_04_1434 - 33568258-33569415
          Length = 385

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 536 DMDFYIFNDIIY**TTRVVYYINTIIIPKHDHAVR 640
           +M FY FN I+Y    R +Y +NTI + +   A++
Sbjct: 132 EMPFYWFNFIVYDDADRRMYCVNTIFVVRLARAIQ 166


>07_03_0375 +
           17408815-17409035,17422820-17423477,17423780-17424161,
           17424236-17424550,17424727-17425118,17432479-17432508
          Length = 665

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/44 (25%), Positives = 26/44 (59%)
 Frame = +1

Query: 361 VILYVPCAILKFYSLKRIIIFHMVFLFKHYMF*RERFMRNLGGP 492
           +++++ C ++K  S+   +  H +F F+ YM   ++++RN   P
Sbjct: 585 IMMHLLCHLVKEISILGPVYLHNMFPFERYMGVLKKYVRNRARP 628


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,867,787
Number of Sequences: 37544
Number of extensions: 214036
Number of successful extensions: 367
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)