Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0679
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    25   0.69 
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    25   0.91 
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    25   0.91 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   3.7  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.7  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    22   6.4  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +2

Query: 425 IWCFYLNIICF-NVNGLCEISVDRFC 499
           +W  +  + C  ++  LC ISVDRFC
Sbjct: 116 LWVSFDVLSCTASILNLCMISVDRFC 141


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -2

Query: 177 KHETHATRKTNEHMKNFKISRTKKIYASNHKSLLLSSMYICQ 52
           K + H    +  +  N+  +  KK+Y +N+K L  +  YI Q
Sbjct: 75  KSKEHKIISSLSNNYNYNNNNYKKLYCNNYKKLYYNINYIEQ 116


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -2

Query: 177 KHETHATRKTNEHMKNFKISRTKKIYASNHKSLLLSSMYICQ 52
           K + H    +  +  N+  +  KK+Y +N+K L  +  YI Q
Sbjct: 75  KSKEHKIISSLSNNYNYNNNNYKKLYCNNYKKLYYNINYIEQ 116


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 390 QNRARNVQNDVND*TNKVHSS 328
           QN  +N QND N   N+VH S
Sbjct: 520 QNDNQNNQNDNNRNDNQVHHS 540


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 4   SEVSIHLSYISCPVRSLTYIH 66
           S ++I + YISCP  S+ + H
Sbjct: 180 SILAIKVYYISCPEISVNFAH 200


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -3

Query: 119 PGPKKFMRPITKVSSSPQC 63
           PG KKF + ITK      C
Sbjct: 97  PGEKKFRKVITKAPLECMC 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,731
Number of Sequences: 438
Number of extensions: 3247
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)