Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0678
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation facto...    67   1e-13
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    25   0.85 
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    24   1.5  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    24   1.5  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   6.0  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   6.0  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   8.0  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   8.0  

>AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation factor
           1-alpha protein.
          Length = 56

 Score = 67.3 bits (157), Expect = 1e-13
 Identities = 30/33 (90%), Positives = 31/33 (93%)
 Frame = +1

Query: 601 LQDVYKIGGIGTVPVGRVETGVLKPGTIVVFGP 699
           LQDVYKIGGIGTVPVGRVETGVLKPG +VVF P
Sbjct: 1   LQDVYKIGGIGTVPVGRVETGVLKPGMVVVFAP 33



 Score = 37.1 bits (82), Expect = 1e-04
 Identities = 16/18 (88%), Positives = 16/18 (88%)
 Frame = +2

Query: 695 APXNITTEVKSXEMHHEA 748
           AP NITTEVKS EMHHEA
Sbjct: 32  APANITTEVKSVEMHHEA 49


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -1

Query: 669 QHTSFN-SADGHGTNTTDFVYVLQ 601
           ++ SFN +A+GHG NT+   Y  Q
Sbjct: 280 EYNSFNWTANGHGHNTSSHNYYAQ 303


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 552 IESFNEAFSVSFAFFTLH 499
           I++FN+ F  SF  FTL+
Sbjct: 271 IDAFNDIFGWSFLLFTLY 288



 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 31  LDKLKAERERGITIDIALWKFETSKYYVTII 123
           L KLK   + G  + +A  KF   K+YV I+
Sbjct: 78  LKKLKFLLKLGQLLGLAPVKFYVQKFYVVIL 108


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 552 IESFNEAFSVSFAFFTLH 499
           I++FN+ F  SF  FTL+
Sbjct: 197 IDAFNDIFGWSFLLFTLY 214



 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 31  LDKLKAERERGITIDIALWKFETSKYYVTII 123
           L KLK   + G  + +A  KF   K+YV I+
Sbjct: 4   LKKLKFLLKLGQLLGLAPVKFYVQKFYVVIL 34


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 423  ESDSSWVVANLLDV*GYFLLDFLKSGLTVWWFSGIHFVYSYDE 295
            +S  ++ + N L V   FLL   K  L + W  G+    +YDE
Sbjct: 1267 QSVFAFFMMNALFVLIVFLLTLKKDYLHIKWPFGVKTNITYDE 1309


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 423  ESDSSWVVANLLDV*GYFLLDFLKSGLTVWWFSGIHFVYSYDE 295
            +S  ++ + N L V   FLL   K  L + W  G+    +YDE
Sbjct: 1267 QSVFAFFMMNALFVLIVFLLTLKKDYLHIKWPFGVKTNITYDE 1309


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = -3

Query: 454 CCLRAIQKWARKRQQLGCSQSS*CMRIL 371
           CC  A+      RQ +  S+   C+R +
Sbjct: 615 CCYHAVAPGTDIRQSIALSRKKKCIRYM 642


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = -3

Query: 454 CCLRAIQKWARKRQQLGCSQSS*CMRIL 371
           CC  A+      RQ +  S+   C+R +
Sbjct: 507 CCYHAVAPGTDIRQSIALSRKKKCIRYM 534


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,332
Number of Sequences: 336
Number of extensions: 4453
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)