Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0678
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 400 e-112
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 399 e-112
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 399 e-112
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 188 7e-49
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 165 6e-42
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 123 2e-29
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 50 5e-07
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 44 2e-05
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 42 1e-04
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 35 0.011
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 34 0.019
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 30 0.31
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 30 0.40
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.54
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma... 28 1.2
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 28 1.6
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 28 1.6
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 27 2.2
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 2.2
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 26 5.0
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit... 25 8.7
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb... 25 8.7
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 400 bits (984), Expect = e-112
Identities = 185/233 (79%), Positives = 206/233 (88%)
Frame = +1
Query: 1 GKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQA 180
GKGSFKYAWVLDKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQA
Sbjct: 50 GKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQA 109
Query: 181 DCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEE 360
DCAVLI+ GTGEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S+ RFEE
Sbjct: 110 DCAVLIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT--GWSQARFEE 167
Query: 361 IKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLI 540
I KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GWQ E K G GK L+
Sbjct: 168 IVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLL 227
Query: 541 EALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFGP 699
EA+D+I PPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGV+KPG IV F P
Sbjct: 228 EAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAP 280
Score = 37.1 bits (82), Expect = 0.003
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = +2
Query: 512 KAKLTENASLKLSMPSCHLPA-PLTSPCVFPCKTYTKSVVLVPCPSAELKLVC*NQVPLL 688
KA + + +L ++ S PA P P P + K + P ++ ++
Sbjct: 217 KAGVVKGKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIV 276
Query: 689 SLAPXNITTEVKSXEMHHEA 748
+ AP +TTEVKS EMHHE+
Sbjct: 277 TFAPAGVTTEVKSVEMHHES 296
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 399 bits (983), Expect = e-112
Identities = 184/233 (78%), Positives = 206/233 (88%)
Frame = +1
Query: 1 GKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQA 180
GKGSFKYAWVLDKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQA
Sbjct: 50 GKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQA 109
Query: 181 DCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEE 360
DCA+LI+ GTGEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S+ RFEE
Sbjct: 110 DCAILIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT--GWSQARFEE 167
Query: 361 IKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLI 540
I KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GWQ E K G GK L+
Sbjct: 168 IVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLL 227
Query: 541 EALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFGP 699
EA+D+I PPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGV+KPG IV F P
Sbjct: 228 EAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAP 280
Score = 37.1 bits (82), Expect = 0.003
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = +2
Query: 512 KAKLTENASLKLSMPSCHLPA-PLTSPCVFPCKTYTKSVVLVPCPSAELKLVC*NQVPLL 688
KA + + +L ++ S PA P P P + K + P ++ ++
Sbjct: 217 KAGVVKGKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIV 276
Query: 689 SLAPXNITTEVKSXEMHHEA 748
+ AP +TTEVKS EMHHE+
Sbjct: 277 TFAPAGVTTEVKSVEMHHES 296
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 399 bits (983), Expect = e-112
Identities = 184/233 (78%), Positives = 206/233 (88%)
Frame = +1
Query: 1 GKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQA 180
GKGSFKYAWVLDKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQA
Sbjct: 50 GKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQA 109
Query: 181 DCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEE 360
DCA+LI+ GTGEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S+ RFEE
Sbjct: 110 DCAILIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT--GWSQARFEE 167
Query: 361 IKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLI 540
I KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GWQ E K G GK L+
Sbjct: 168 IVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLL 227
Query: 541 EALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFGP 699
EA+D+I PPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGV+KPG IV F P
Sbjct: 228 EAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAP 280
Score = 37.1 bits (82), Expect = 0.003
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = +2
Query: 512 KAKLTENASLKLSMPSCHLPA-PLTSPCVFPCKTYTKSVVLVPCPSAELKLVC*NQVPLL 688
KA + + +L ++ S PA P P P + K + P ++ ++
Sbjct: 217 KAGVVKGKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIV 276
Query: 689 SLAPXNITTEVKSXEMHHEA 748
+ AP +TTEVKS EMHHE+
Sbjct: 277 TFAPAGVTTEVKSVEMHHES 296
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 188 bits (458), Expect = 7e-49
Identities = 109/254 (42%), Positives = 147/254 (57%), Gaps = 4/254 (1%)
Frame = +1
Query: 1 GKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQA 180
GKGSF YAW+LD + ER RG+T+D+A FE+ K I DAPGHRDFI MI G S A
Sbjct: 220 GKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSA 279
Query: 181 DCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEE 360
D AVL+V + FE G +NGQTREHA L LG+ +++V VNK+D +SE RF+E
Sbjct: 280 DFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMS--WSEDRFQE 337
Query: 361 IKKEVSSY-IKKIGYNPAAVAFVPISGWHGDNML--EPSTKMPWFKGWQVERKEGKADGK 531
IK VS + IK +G+ + V FVPIS G N++ + S W+K G
Sbjct: 338 IKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYK------------GP 385
Query: 532 CLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVV-FGPRQH 708
L+ ALD ++PP +P KPLRL + DVY+ TV GRVE G ++ ++ ++
Sbjct: 386 TLLSALDQLVPPEKPYRKPLRLSIDDVYRSPRSVTV-TGRVEAGNVQVNQVLYDVSSQED 444
Query: 709 HY*SQIXGNAPRSS 750
Y + N+ SS
Sbjct: 445 AYVKNVIRNSDPSS 458
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 165 bits (401), Expect = 6e-42
Identities = 87/237 (36%), Positives = 139/237 (58%), Gaps = 4/237 (1%)
Frame = +1
Query: 1 GKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQA 180
GK S+ +W LD ERE+G T+++ FET +++DAPGH+ ++ NMI G SQA
Sbjct: 281 GKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQA 340
Query: 181 DCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEE 360
D VL+++A GEFEAG + GQTREHA+LA T G+ L+V +NKMD +SE R++E
Sbjct: 341 DIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKE 400
Query: 361 IKKEVSSYIKKI-GYNPAA-VAFVPISGWHGDNMLE--PSTKMPWFKGWQVERKEGKADG 528
++S +++++ GYN V ++P+S + G N+ + S+ PW++ G
Sbjct: 401 CVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQ------------G 448
Query: 529 KCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFGP 699
L+E LD++ R + P +P+ YK +GT+ G++E G +K + V+ P
Sbjct: 449 PSLLEYLDSMTHLERKVNAPFIMPIASKYK--DLGTILEGKIEAGSIKKNSNVLVMP 503
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 123 bits (297), Expect = 2e-29
Identities = 88/239 (36%), Positives = 126/239 (52%), Gaps = 3/239 (1%)
Frame = +1
Query: 1 GKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQA 180
G+ SF +DK E+ RGITI A ++ET+ + +D PGH D+IKNMITG +
Sbjct: 81 GQASFMDYSQIDKAPEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATM 140
Query: 181 DCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEE 360
D A+++V+A G+ QTREH LLA +GVKQ++V +NK+D EP E E
Sbjct: 141 DGAIIVVSATDGQMP-------QTREHLLLARQVGVKQIVVYINKVDMVEPDMIELVEME 193
Query: 361 IKKEVSSYIKKIGYNPAAVAFVPISGWHGDNM-LEPSTKMPWFKGWQVERKEGKADGKCL 537
+++ +S Y G+ GDN + + + +G + E G L
Sbjct: 194 MRELLSEY-----------------GFDGDNTPIVSGSALCALEGREPE--IGLNSITKL 234
Query: 538 IEALDA-ILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGT-IVVFGPRQH 708
+EA+D+ I P R TD P + ++DV+ I G GTV GRVE G LK G I + G H
Sbjct: 235 MEAVDSYITLPERKTDVPFLMAIEDVFSISGRGTVVTGRVERGTLKKGAEIEIVGYGSH 293
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 49.6 bits (113), Expect = 5e-07
Identities = 36/98 (36%), Positives = 50/98 (51%)
Frame = +1
Query: 28 VLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 207
V+D L AER+RGITI+ A F + +ID PGH DF + + D AV I+
Sbjct: 67 VMDYLPAERQRGITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAII-- 124
Query: 208 GTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 321
+ AG+ QT+ A G+ ++I VNKMD
Sbjct: 125 ---DGSAGV--EAQTKVVWKQATKRGIPKVIF-VNKMD 156
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 44.0 bits (99), Expect = 2e-05
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Frame = +1
Query: 31 LDKLKAERERGITIDIA----LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 198
LDKL+ ER RGIT+ ++ + Y + +ID PGH DF ++ + + +L+
Sbjct: 95 LDKLEVERRRGITVKAQTCSMIYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILL 154
Query: 199 VAAGTG 216
V A G
Sbjct: 155 VDASQG 160
Score = 30.3 bits (65), Expect = 0.31
Identities = 21/68 (30%), Positives = 30/68 (44%)
Frame = +1
Query: 475 MPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRV 654
+P K V K GK + L E + I PP + PLR L D + G + + R+
Sbjct: 206 IPMSKPILVSSKTGKNVEQILPEIIQKIPPPKGSENAPLRCLLIDSWYNSYQGVIGLVRI 265
Query: 655 ETGVLKPG 678
G +K G
Sbjct: 266 MEGFIKKG 273
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 41.5 bits (93), Expect = 1e-04
Identities = 23/93 (24%), Positives = 42/93 (45%)
Frame = +1
Query: 109 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 288
+V+ +D PGH + M+ G + D A+L++A QT EH + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162
Query: 289 KQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYI 387
K +I+ NK+D +E ++ I K + +
Sbjct: 163 KHIIILQNKVDLIRESAAEEHYQSILKFIKGTV 195
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 35.1 bits (77), Expect = 0.011
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = +1
Query: 1 GKGSFKYAWVLDKLKAERERGITIDIALWK--FETSKYYVTIIDAPGHRDFIKNMITGTS 174
GK + A+ + + GIT I + F+ ++T +D PGH F G +
Sbjct: 183 GKTTLLDAFRKSTIASTEHGGITQKIGAFTVPFDKGSKFITFLDTPGHMAFEAMRKRGAN 242
Query: 175 QADCAVLIVAAGTG 216
AD VL+VA G
Sbjct: 243 IADIVVLVVAGDDG 256
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 34.3 bits (75), Expect = 0.019
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 19/96 (19%)
Frame = +1
Query: 31 LDKLKAERERGITIDIA----LWK---------------FETSKYYVTIIDAPGHRDFIK 153
+D ++ ERE+GITI A W+ FE S Y + IID PGH DF
Sbjct: 102 MDFMELEREKGITIQSAATHCTWERTVDQIEANEKQKTDFEKS-YNINIIDTPGHIDFTI 160
Query: 154 NMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 261
+ D AVL++ A +G I+ + Q R +
Sbjct: 161 EVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRY 196
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 30.3 bits (65), Expect = 0.31
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 106 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 216
Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 29.9 bits (64), Expect = 0.40
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = +1
Query: 34 DKLKAER-ERGITIDIALWKFETSKYYV--TIIDAPGHRDFIKN 156
+K++A+ E+ + I+I + E +++ T+ID PG DFI N
Sbjct: 60 EKVRAKHAEKTVEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.54
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 118 IIDAPGHRDFIKNMITGTSQADCAVLIV 201
IID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 835
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = -2
Query: 575 GRAGGRMASRASMRHFPSALPSLRSTCHPLNQGILVEGSNMLSPCH 438
G GG S+ P+ LPS + P L E +ML CH
Sbjct: 545 GAGGGHAPDIISLVQNPNILPSSTNPTRPFTTNTLDEELDMLMVCH 590
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 106 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 201
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 106 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 201
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +2
Query: 338 TVSPDLRKSRRKYPHTSRRLATTQLL---SLSCPFLDGTETTCWSLQPKCLGSRDGRWSV 508
+ +PD+ ++PHT +R +T + L LSC + +E + P G +D + +
Sbjct: 145 STNPDVLYMSSQHPHTQQRYSTLKRLMVRCLSCEYSTLSEASDSMSNPLFFGDQDNGYVI 204
Query: 509 KKA 517
++
Sbjct: 205 SQS 207
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 27.5 bits (58), Expect = 2.2
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +1
Query: 49 ERERGITID-----IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 201
ERER ++I +A+ + + ID PGH DF+ + + +D VL+V
Sbjct: 185 ERERVMSIKSTPLTLAVSDMKGKTFAFQCIDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 26.2 bits (55), Expect = 5.0
Identities = 22/72 (30%), Positives = 25/72 (34%), Gaps = 5/72 (6%)
Frame = -2
Query: 677 PGFNTPVSTLPTGTVPIP-PILYTSCR--GRRRGLSVGRAGGRMASRASMRH--FPSALP 513
P +N P G+VP+P P S R R S GR S H PS LP
Sbjct: 314 PNYNAPFQPAGVGSVPLPAPTSSQSLRLGSLHRSRSPSPRSGRPRRSPSPSHLSIPSTLP 373
Query: 512 SLRSTCHPLNQG 477
P G
Sbjct: 374 PADGVPKPTPDG 385
>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
factor complex subunit Rna14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 733
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 668 NTPVSTLPTGTVPIPPIL 615
N P S LPT VP+P I+
Sbjct: 666 NPPTSALPTVPVPLPSII 683
>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 25.4 bits (53), Expect = 8.7
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +1
Query: 316 MDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWF 486
+D +P + F IKK+V Y+ ++ + P + G N LEP TK PW+
Sbjct: 107 LDLKKPLLPQILFGNIKKDV--YLDQV-HRPRHYRGSGSAPLFG-NFLEPLTKTPWY 159
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,344,810
Number of Sequences: 5004
Number of extensions: 73812
Number of successful extensions: 264
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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