Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0678
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)          145   4e-35
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                126   1e-29
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)             113   2e-25
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              42   5e-04
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     42   5e-04
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               35   0.061
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.11 
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)              31   1.00 
SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066)             31   1.3  
SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)                   30   1.7  
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              30   2.3  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.0  
SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    28   7.0  
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  
SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  

>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score =  145 bits (351), Expect = 4e-35
 Identities = 61/129 (47%), Positives = 93/129 (72%)
 Frame = +1

Query: 22  AWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 201
           +W LD  + ER++G T+++    F+T   + T++DAPGH+ F+ NMI+G +QAD  VL++
Sbjct: 194 SWALDTNQEERDKGNTVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVI 253

Query: 202 AAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSS 381
           +A  GEFE G  + GQTREHA+LA T GVK L++ VNKMD     ++E R+EEIK +++ 
Sbjct: 254 SARKGEFETGFERGGQTREHAMLAKTAGVKHLVILVNKMDDPTVKWNEERYEEIKVKLTP 313

Query: 382 YIKKIGYNP 408
           ++KK+G+NP
Sbjct: 314 FLKKVGFNP 322


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score =  126 bits (305), Expect = 1e-29
 Identities = 57/59 (96%), Positives = 58/59 (98%)
 Frame = +1

Query: 1   GKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 177
           GKGSFKYAWVLDKLKAERERGITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 2   GKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60



 Score =  126 bits (303), Expect = 3e-29
 Identities = 59/89 (66%), Positives = 68/89 (76%), Gaps = 6/89 (6%)
 Frame = +1

Query: 451 NMLEPSTKMPWFKGWQVER------KEGKADGKCLIEALDAILPPARPTDKPLRLPLQDV 612
           NM+  +++MPWFK W +ER      KE  A G  L E LD+ILPP+RP+  PLRLPLQDV
Sbjct: 53  NMITGTSQMPWFKQWTIERVDPATKKEANASGVTLFEGLDSILPPSRPSGLPLRLPLQDV 112

Query: 613 YKIGGIGTVPVGRVETGVLKPGTIVVFGP 699
           YKIGGIGTVPVGRVETGVLKPGT+V F P
Sbjct: 113 YKIGGIGTVPVGRVETGVLKPGTVVTFSP 141



 Score = 35.9 bits (79), Expect = 0.035
 Identities = 14/22 (63%), Positives = 19/22 (86%)
 Frame = +2

Query: 683 LLSLAPXNITTEVKSXEMHHEA 748
           +++ +P NITTEVKS EMHHE+
Sbjct: 136 VVTFSPSNITTEVKSVEMHHES 157


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score =  113 bits (271), Expect = 2e-25
 Identities = 50/84 (59%), Positives = 65/84 (77%)
 Frame = +1

Query: 70  IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 249
           +D+ L +F+T    +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG    GQ
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60

Query: 250 TREHALLAFTLGVKQLIVGVNKMD 321
           TREHA+L  +LGV QLIV +NK+D
Sbjct: 61  TREHAILVRSLGVTQLIVAINKLD 84


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 30/117 (25%), Positives = 52/117 (44%)
 Frame = +1

Query: 37  KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 216
           + K E ER ITI +         Y    +D PGH   +  M+ G +  D A+L++A    
Sbjct: 49  RFKNELERNITIKLG--------YANAKVDCPGHDILMATMLNGAAVMDAALLLIAGNES 100

Query: 217 EFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYI 387
                     QT EH      + +K +++  NK+D  +   ++ ++++I K V   I
Sbjct: 101 ------CPQPQTSEHLAAIEIMKLKHILILQNKIDLVKESQAKDQYDQILKFVQGTI 151


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 16/61 (26%), Positives = 33/61 (54%)
 Frame = +1

Query: 34  DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 213
           D ++ ER+RGI++  ++  F      + I+D PGH+DF ++     +  D  ++++    
Sbjct: 55  DFMEIERQRGISVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAK 114

Query: 214 G 216
           G
Sbjct: 115 G 115


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 35.1 bits (77), Expect = 0.061
 Identities = 29/107 (27%), Positives = 45/107 (42%)
 Frame = +1

Query: 61  GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 240
           GIT  I  +  +     +  +D PGH  F      G    D  +++VAA           
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMP----- 177

Query: 241 NGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSS 381
             QT+E    A   GV  +I  +NK+D    P + P  + IK ++S+
Sbjct: 178 --QTKEAISHAQAAGV-PIIFAINKIDK---PNANP--DNIKTQLST 216


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 24/70 (34%), Positives = 34/70 (48%)
 Frame = +1

Query: 112 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 291
           +T ID PGH  F      G +  D  VL+VAA  G      ++  ++  HA+ A      
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGV----KTQTVESIRHAMHAKV---- 129

Query: 292 QLIVGVNKMD 321
            LIV +NK+D
Sbjct: 130 PLIVAINKID 139


>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
          Length = 203

 Score = 31.1 bits (67), Expect = 1.00
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
 Frame = +1

Query: 34  DKLKAERERGITIDIALWKFETSK-------------YYVTIIDAPGHRDFIKNMITGTS 174
           DK    +ERGIT+D+    F+ +                +T++D PGH   IK +I G  
Sbjct: 65  DKNPQSQERGITLDLGFSSFQVALPEHLRSAGSEHDLLQMTLVDCPGHASLIKTIIGG-- 122

Query: 175 QADCAVLIVAAGTGEFEAGISKNGQTR 255
               A +I   GT   E G  ++G+ +
Sbjct: 123 ----AQIIGECGT--IEGGFGQSGKVK 143


>SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066)
          Length = 177

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +1

Query: 580 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFGP 699
           ++P    + D Y + G+GTV  G    G+++    ++ GP
Sbjct: 102 EEPSEFQIDDTYSVPGVGTVISGTCMKGIIRLNDTLLLGP 141


>SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)
          Length = 1213

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
 Frame = -2

Query: 386  MYEDTS---FLISSNLGSLYGGSVESILFTPTMSCLTPRVKASKAC------SRV*PFLE 234
            +Y+D S    L+S N   L   ++E IL TPT    +    + K C      +   P   
Sbjct: 796  LYQDPSKLTALLSCNFNDLKIDNMEVILLTPTSMAASMATSSKKVCPSSAPTTTTNPTPS 855

Query: 233  IPASNSPVPAAT 198
            +   NSP+P+ T
Sbjct: 856  VTNGNSPIPSGT 867


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 118 IIDAPGHRDFIKNMITGTSQADCAVLIV 201
           IID PGH  F      G+S  D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = +1

Query: 28   VLDKLKAERERGITI 72
            VLDKL+ ERERGIT+
Sbjct: 1977 VLDKLQVERERGITV 1991


>SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 476

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 439 WHGDNMLEPSTKMPWFKGWQVERKE 513
           +H DN    +   PWF+ W  +++E
Sbjct: 191 YHNDNKTHSTQTGPWFRAWSNQKRE 215


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 106 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 216
           + + +ID+PGH DF   +       D A+++V   +G
Sbjct: 99  FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135


>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3112

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = +1

Query: 322  STEPPYSEPRFEEIKKE----VSSYIKKIGYNPA-AVAFVPISGWHGDNMLE 462
            ST    S+  FE  KK      +S+ K    +P+  + FVP   WHG+ M+E
Sbjct: 1062 STRANSSQGGFEAKKKSWTKLSASFAKPEVVDPSDKIRFVPAVNWHGEQMIE 1113


>SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 495 PSLEPRHFG*RLQHVVSVPSRNGHESDSSWVVANLLD 385
           P+LEP + G  L  + S  S  GH+ D+   ++ LL+
Sbjct: 378 PNLEPSYIGKMLATIESTLSAKGHQEDAEEFLSCLLN 414


>SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 950

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
 Frame = +1

Query: 193 LIVAAGTGEFEAGISKNGQTREHALLAFTLGVK-QLIVGVNKMDSTEPPYSEPRFEEIKK 369
           ++VAA   EF A ++KNG     ++  F  G + QL +G + M+ TE P   P FE++K 
Sbjct: 371 VVVAACGAEFTAVVTKNG-----SVYTFGQGNQGQLGLGSSMME-TEFPERIPLFEKVKA 424

Query: 370 EVSS 381
              S
Sbjct: 425 RTVS 428


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,660,571
Number of Sequences: 59808
Number of extensions: 598153
Number of successful extensions: 1991
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1987
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)