Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0678
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   471   e-135
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   456   e-130
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   454   e-130
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...   352   2e-99
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    38   1e-04
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   3.1  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   4.0  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    21   9.3  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   9.3  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   9.3  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  471 bits (1162), Expect = e-135
 Identities = 221/233 (94%), Positives = 224/233 (96%)
 Frame = +1

Query: 1   GKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQA 180
           GKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQA
Sbjct: 50  GKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQA 109

Query: 181 DCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEE 360
           DCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE RFEE
Sbjct: 110 DCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEE 169

Query: 361 IKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLI 540
           IKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLE S+KMPWFKGW VERKEGK +GKCLI
Sbjct: 170 IKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCLI 229

Query: 541 EALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFGP 699
           EALDAILPP RPTDK LRLPLQDVYKIGGIGTVPVGRVETGVLKPG +V F P
Sbjct: 230 EALDAILPPTRPTDKALRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAP 282



 Score = 35.1 bits (77), Expect = 7e-04
 Identities = 14/22 (63%), Positives = 18/22 (81%)
 Frame = +2

Query: 683 LLSLAPXNITTEVKSXEMHHEA 748
           +++ AP  +TTEVKS EMHHEA
Sbjct: 277 VVTFAPAGLTTEVKSVEMHHEA 298


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  456 bits (1123), Expect = e-130
 Identities = 212/233 (90%), Positives = 221/233 (94%)
 Frame = +1

Query: 1   GKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQA 180
           GKGSFKYAWVLDKLKAERERGITIDIALWKFET+KYYVTIIDAPGHRDFIKNMITGTSQA
Sbjct: 50  GKGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQA 109

Query: 181 DCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEE 360
           DCAVLIVAAG GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD T+PPYSE RFEE
Sbjct: 110 DCAVLIVAAGIGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDMTDPPYSEARFEE 169

Query: 361 IKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLI 540
           IKKEVSSYIKKIGYN A+VAFVPISGWHGDNMLEPS K PW+KGW+VERK+G ADGK LI
Sbjct: 170 IKKEVSSYIKKIGYNTASVAFVPISGWHGDNMLEPSPKTPWYKGWKVERKDGNADGKTLI 229

Query: 541 EALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFGP 699
           EALDAILPP+RPTDK LRLPLQDVYKIGGIGTVPVGRVETG+LKPG +V F P
Sbjct: 230 EALDAILPPSRPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGMLVTFAP 282



 Score = 35.5 bits (78), Expect = 5e-04
 Identities = 15/22 (68%), Positives = 18/22 (81%)
 Frame = +2

Query: 683 LLSLAPXNITTEVKSXEMHHEA 748
           L++ AP  +TTEVKS EMHHEA
Sbjct: 277 LVTFAPAALTTEVKSVEMHHEA 298


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score =  454 bits (1119), Expect = e-130
 Identities = 213/225 (94%), Positives = 216/225 (96%)
 Frame = +1

Query: 25  WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 204
           WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA
Sbjct: 1   WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 60

Query: 205 AGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSY 384
           AGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE RFEEIKKEVSSY
Sbjct: 61  AGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSY 120

Query: 385 IKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILP 564
           IKKIGYNPAAVAFVPISGWHGDNMLE S+KMPWFKGW VERKEGK +GKCLIEALDAILP
Sbjct: 121 IKKIGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCLIEALDAILP 180

Query: 565 PARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFGP 699
           P RPTDK LRLPLQDVYKIGGIGTVPVGRVETGVLKPG +V F P
Sbjct: 181 PTRPTDKALRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAP 225



 Score = 35.1 bits (77), Expect = 7e-04
 Identities = 14/22 (63%), Positives = 18/22 (81%)
 Frame = +2

Query: 683 LLSLAPXNITTEVKSXEMHHEA 748
           +++ AP  +TTEVKS EMHHEA
Sbjct: 220 VVTFAPAGLTTEVKSVEMHHEA 241


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score =  352 bits (865), Expect = 2e-99
 Identities = 164/171 (95%), Positives = 166/171 (97%)
 Frame = +1

Query: 73  DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 252
           DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT
Sbjct: 1   DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 60

Query: 253 REHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPI 432
           REHALLAFTLGVKQLIVGVNKMDSTEPPYSE RFEEIKKEVSSYIKKIGYNPAAVAFVPI
Sbjct: 61  REHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPI 120

Query: 433 SGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDK 585
           SGWHGDNMLE S+KMPWFKGW VERKEGK +GKCLIEALDAILPP RPTDK
Sbjct: 121 SGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCLIEALDAILPPTRPTDK 171


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 37.5 bits (83), Expect = 1e-04
 Identities = 36/117 (30%), Positives = 52/117 (44%)
 Frame = +1

Query: 112 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 291
           VT +D PGH  FI     G    D  VL+VAA  G  E       QT +   +A    V 
Sbjct: 195 VTFLDTPGHAAFISMRHRGAHITDIVVLVVAADDGVKE-------QTLQSIEMAKDAKV- 246

Query: 292 QLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLE 462
            +IV +NK+D       + ++E  K  +   I+++G     +  V IS   G N+ E
Sbjct: 247 PIIVAINKIDKPNIDIIKVQYELAKHGI--VIEELG---GEIQCVKISALKGINLRE 298


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 97  TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 198
           T KYY    D P +  FIKN+   ++ +D   LI
Sbjct: 294 TMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLI 327


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 97  TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 198
           T KYY    D P +  FIKN+   ++ +D   L+
Sbjct: 294 TMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLV 327


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +2

Query: 722 KSXEMHHEA 748
           KS EMHHEA
Sbjct: 1   KSVEMHHEA 9


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 474 FG*RLQHVVSVPSRNGHESDSSWV 403
           FG  L H++ V  +N   + + WV
Sbjct: 35  FGLSLHHIIDVDEKNQILTTNCWV 58


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +2

Query: 317 WIPLNHHTVSPDLRKSRRKY 376
           W+P+N +  S +L   +R+Y
Sbjct: 443 WLPVNENYKSLNLAAQKREY 462


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,394
Number of Sequences: 438
Number of extensions: 5039
Number of successful extensions: 19
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)