Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0677
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    23   2.0  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   4.6  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    22   4.6  

>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 373 HLLMSFSSKTKDGCPEL 423
           HLL  F ++ KD CPE+
Sbjct: 366 HLLPLFLTQLKDECPEV 382


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +1

Query: 247 MANGKLFRMDIRNPDSEQEIHYSKY 321
           +ANG L     R  D  QE+H   Y
Sbjct: 75  LANGNLVFPPFRAEDYRQEVHAQVY 99



 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 514 TSNNMTGPILLGTSKGHLLETE 579
           T + +TG   L  +KG L+ TE
Sbjct: 203 TKHRLTGETRLSATKGRLVITE 224


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +1

Query: 457 FVSKIPNYEITEVGWNFENTSNNMTGPI 540
           ++  + NY ++E+  NF       TGP+
Sbjct: 49  WICALVNYNVSEISENFYYLPAMSTGPL 76


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,783
Number of Sequences: 336
Number of extensions: 3942
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)