Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0677
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.18 |spo4||serine/threonine protein kinase Spo4|Schizosa...    28   1.2  
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    25   8.7  
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    25   8.7  

>SPBC21C3.18 |spo4||serine/threonine protein kinase
           Spo4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 20/73 (27%), Positives = 32/73 (43%)
 Frame = +1

Query: 151 DNVPMFTKQKMNLNPSDLITHAAVSSDNLVVAMANGKLFRMDIRNPDSEQEIHYSKYCQP 330
           DN+P    QK N    DLI     + +NL++  ++     + I   D   E+H SK  + 
Sbjct: 337 DNIPTLLDQKHNW--LDLIASITKNDENLILETSSDYQVALAIDLLDKLLELHPSKRVKA 394

Query: 331 TSKLSGLFLDPLG 369
            + L   F +  G
Sbjct: 395 KTALQHEFFNACG 407


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
 Frame = +1

Query: 193 PSDL-ITHAAVSSDNLVVAMANGKLFRMDIRNP-DSEQEIHYSKYCQPTSKLSGLFLDPL 366
           P D+ +  +A++   +VVA++NG+L   ++ +  +  Q   Y +    T+ ++ L L P+
Sbjct: 564 PQDVYVVQSAINDMQIVVALSNGELVYFEMSDDVEGGQLNEYQERKTLTANVTSLALGPV 623


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 540

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 9  RRCSYTNCFFQNDF 50
          R+C   NCFF +DF
Sbjct: 20 RKCQSRNCFFSHDF 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,154,627
Number of Sequences: 5004
Number of extensions: 65267
Number of successful extensions: 169
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)