BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0677 (750 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 08_01_0525 + 4564885-4565221,4565337-4565476,4565582-4565677,456... 41 0.001 08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973... 31 0.98 03_04_0066 + 17003276-17004067 31 0.98 02_05_1219 + 35011571-35011897,35012008-35013780,35013915-350140... 29 3.9 >08_01_0525 + 4564885-4565221,4565337-4565476,4565582-4565677, 4566079-4566146,4566542-4566643,4567492-4567630, 4567758-4567898,4568241-4568297,4568400-4568459, 4568866-4568973,4569834-4569994,4570453-4570531, 4571357-4571490,4571846-4571951,4572244-4572432, 4572595-4572822,4573028-4573183,4573491-4573532, 4573752-4573868,4573945-4574121 Length = 878 Score = 41.1 bits (92), Expect = 0.001 Identities = 25/97 (25%), Positives = 46/97 (47%) Frame = +1 Query: 349 LFLDPLGCHLLMSFSSKTKDGCPELAYIHQKSSKLKFVSKIPNYEITEVGWNFENTSNNM 528 +FLDP G H + ++ G E Y H + + K + ++ N + V WN + + Sbjct: 58 VFLDPGGKHCV---ATVVHPGGAETYYHHARWPRPKLLPRLRNVLVNAVAWNRQTITEAS 114 Query: 529 TGPILLGTSKGHLLETELEPNNDKMFIASEQYWRQIF 639 T ++LGT G + E ++ + K E+Y + +F Sbjct: 115 TKEVILGTEDGQIFEIAVDEADKK-----EKYVKSLF 146 >08_02_0864 + 21994286-21994989,21996257-21996958,21997221-21997374, 21997494-21997838,21998323-21999240,21999312-21999640, 21999709-21999832,21999901-22000071,22000188-22001648, 22002647-22002910,22003866-22004189 Length = 1831 Score = 31.1 bits (67), Expect = 0.98 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = +1 Query: 325 QPTSKLSGLFLDPLGCHLLMSFSSKTKDG 411 +PTS +S + P+ CH ++ +SK KDG Sbjct: 1448 EPTSIISYALVSPMYCHQMLDENSKNKDG 1476 >03_04_0066 + 17003276-17004067 Length = 263 Score = 31.1 bits (67), Expect = 0.98 Identities = 25/82 (30%), Positives = 36/82 (43%) Frame = +1 Query: 7 VVGVVIRTVFSKMTSILDQYKQAAQASYRTKPPAEPMISSGYINMQLEDNVPMFTKQKMN 186 VVGV T SK+ + L S+R KPP + N +DN+P KM Sbjct: 73 VVGVAKTTHRSKLAAFLGSLVSPESTSFRKKPPPAASSETTTYNYNDDDNLP-----KMQ 127 Query: 187 LNPSDLITHAAVSSDNLVVAMA 252 + PS T + +S ++ A A Sbjct: 128 V-PSSSSTSSGRASIDVAAAAA 148 >02_05_1219 + 35011571-35011897,35012008-35013780,35013915-35014068, 35014158-35014801 Length = 965 Score = 29.1 bits (62), Expect = 3.9 Identities = 29/96 (30%), Positives = 46/96 (47%) Frame = +1 Query: 361 PLGCHLLMSFSSKTKDGCPELAYIHQKSSKLKFVSKIPNYEITEVGWNFENTSNNMTGPI 540 PL +LL FS ++G + ++ SK KF+ N +TE+ W T+ M P Sbjct: 820 PLELYLLEKFSDYQEEGTK----LRERRSKEKFLFDAVNEALTELTW----TAELMAYP- 870 Query: 541 LLGTSKGHLLETELEPNNDKMFIASEQYWRQIFRHW 648 LG S LE + + N A+++ WR + R+W Sbjct: 871 -LGRSSS--LERK-DCENAFSNSAADEIWR-VIRNW 901 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 19,484,161 Number of Sequences: 37544 Number of extensions: 385478 Number of successful extensions: 822 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 796 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 821 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1992480932 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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