Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0677
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0525 + 4564885-4565221,4565337-4565476,4565582-4565677,456...    41   0.001
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973...    31   0.98 
03_04_0066 + 17003276-17004067                                         31   0.98 
02_05_1219 + 35011571-35011897,35012008-35013780,35013915-350140...    29   3.9  

>08_01_0525 +
           4564885-4565221,4565337-4565476,4565582-4565677,
           4566079-4566146,4566542-4566643,4567492-4567630,
           4567758-4567898,4568241-4568297,4568400-4568459,
           4568866-4568973,4569834-4569994,4570453-4570531,
           4571357-4571490,4571846-4571951,4572244-4572432,
           4572595-4572822,4573028-4573183,4573491-4573532,
           4573752-4573868,4573945-4574121
          Length = 878

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 25/97 (25%), Positives = 46/97 (47%)
 Frame = +1

Query: 349 LFLDPLGCHLLMSFSSKTKDGCPELAYIHQKSSKLKFVSKIPNYEITEVGWNFENTSNNM 528
           +FLDP G H +   ++    G  E  Y H +  + K + ++ N  +  V WN +  +   
Sbjct: 58  VFLDPGGKHCV---ATVVHPGGAETYYHHARWPRPKLLPRLRNVLVNAVAWNRQTITEAS 114

Query: 529 TGPILLGTSKGHLLETELEPNNDKMFIASEQYWRQIF 639
           T  ++LGT  G + E  ++  + K     E+Y + +F
Sbjct: 115 TKEVILGTEDGQIFEIAVDEADKK-----EKYVKSLF 146


>08_02_0864 + 21994286-21994989,21996257-21996958,21997221-21997374,
            21997494-21997838,21998323-21999240,21999312-21999640,
            21999709-21999832,21999901-22000071,22000188-22001648,
            22002647-22002910,22003866-22004189
          Length = 1831

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 325  QPTSKLSGLFLDPLGCHLLMSFSSKTKDG 411
            +PTS +S   + P+ CH ++  +SK KDG
Sbjct: 1448 EPTSIISYALVSPMYCHQMLDENSKNKDG 1476


>03_04_0066 + 17003276-17004067
          Length = 263

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 25/82 (30%), Positives = 36/82 (43%)
 Frame = +1

Query: 7   VVGVVIRTVFSKMTSILDQYKQAAQASYRTKPPAEPMISSGYINMQLEDNVPMFTKQKMN 186
           VVGV   T  SK+ + L         S+R KPP      +   N   +DN+P     KM 
Sbjct: 73  VVGVAKTTHRSKLAAFLGSLVSPESTSFRKKPPPAASSETTTYNYNDDDNLP-----KMQ 127

Query: 187 LNPSDLITHAAVSSDNLVVAMA 252
           + PS   T +  +S ++  A A
Sbjct: 128 V-PSSSSTSSGRASIDVAAAAA 148


>02_05_1219 + 35011571-35011897,35012008-35013780,35013915-35014068,
            35014158-35014801
          Length = 965

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 29/96 (30%), Positives = 46/96 (47%)
 Frame = +1

Query: 361  PLGCHLLMSFSSKTKDGCPELAYIHQKSSKLKFVSKIPNYEITEVGWNFENTSNNMTGPI 540
            PL  +LL  FS   ++G      + ++ SK KF+    N  +TE+ W    T+  M  P 
Sbjct: 820  PLELYLLEKFSDYQEEGTK----LRERRSKEKFLFDAVNEALTELTW----TAELMAYP- 870

Query: 541  LLGTSKGHLLETELEPNNDKMFIASEQYWRQIFRHW 648
             LG S    LE + +  N     A+++ WR + R+W
Sbjct: 871  -LGRSSS--LERK-DCENAFSNSAADEIWR-VIRNW 901


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,484,161
Number of Sequences: 37544
Number of extensions: 385478
Number of successful extensions: 822
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)