Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0677
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44567| Best HMM Match : No HMM Matches (HMM E-Value=.) 65 5e-11
SB_46306| Best HMM Match : 6PGD (HMM E-Value=0) 30 1.7
SB_50808| Best HMM Match : Ricin_B_lectin (HMM E-Value=0.33) 29 3.0
SB_7441| Best HMM Match : Collagen (HMM E-Value=0.05) 29 3.0
SB_41067| Best HMM Match : Ribosomal_L17 (HMM E-Value=1.7e-05) 29 3.0
SB_49129| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_22639| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_35552| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18) 28 9.3
>SB_44567| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 759
Score = 65.3 bits (152), Expect = 5e-11
Identities = 41/150 (27%), Positives = 75/150 (50%), Gaps = 7/150 (4%)
Frame = +1
Query: 43 MTSILDQYKQAAQAS-------YRTKPPAEPMISSGYINMQLEDNVPMFTKQKMNLNPSD 201
M SILDQY+ AA + T EP I++G++ ++ ED +P+F +QK+N P
Sbjct: 1 MASILDQYELAASRGAVDSLNPFLTPDTVEP-ITTGFVELKTEDEIPIFRRQKINFRPPS 59
Query: 202 LITHAAVSSDNLVVAMANGKLFRMDIRNPDSEQEIHYSKYCQPTSKLSGLFLDPLGCHLL 381
+ VS++ + V ++ + R+D+ N + K + + +F+DP HL+
Sbjct: 60 NMVDLVVSNNTVAVGLSTNVIMRIDLANTSEIDSVEVCK--RLDDAIHRIFIDPTARHLI 117
Query: 382 MSFSSKTKDGCPELAYIHQKSSKLKFVSKI 471
+ S+ E Y+ + S K K ++K+
Sbjct: 118 VCMKSQ------ESYYLARNSKKPKPMTKM 141
>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
Length = 870
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/75 (28%), Positives = 34/75 (45%)
Frame = +1
Query: 412 CPELAYIHQKSSKLKFVSKIPNYEITEVGWNFENTSNNMTGPILLGTSKGHLLETELEPN 591
C E + +++ K V +IP + TEV W E+ N P K ++ T EP
Sbjct: 452 CSEHVSSNDSNAQWKRVKRIPR-QATEVNW--ESVKRNQAPPKDEMYDKWIIITTINEPT 508
Query: 592 NDKMFIASEQYWRQI 636
D +AS + W+ +
Sbjct: 509 EDVKKLASIEGWKVV 523
>SB_50808| Best HMM Match : Ricin_B_lectin (HMM E-Value=0.33)
Length = 680
Score = 29.5 bits (63), Expect = 3.0
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Frame = +1
Query: 52 ILDQYKQAAQASYRTKP-PAEPMISSGYINMQLEDNVPMFTKQKMNLNPSDLITHAAVSS 228
++D KQ + K A + G N+++ D + K N+ D H ++
Sbjct: 555 VIDASKQVREGKDNIKVLDASKQVREGKDNIKVLDASKQVREGKDNIKVLDASKHTRDNN 614
Query: 229 DNLVVAMANGKLFRMDIRNPDSEQEIHYSKYCQPTSKLSGLFLDPLGCHLLMSFSSKTKD 408
DN+ A+GK +I D + C S+ S +F DP C +L++ + D
Sbjct: 615 DNIPKVTASGKHLNNEI---DENPGVVTINKC--NSEKSCMF-DPTKCPMLLTKAKSQTD 668
>SB_7441| Best HMM Match : Collagen (HMM E-Value=0.05)
Length = 510
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 442 SSKLKFVSKIPNYEITEVGWNFENTSNNMT 531
+ + F +KI +E T+ G+NF T +N+T
Sbjct: 197 TKNIPFATKIGKFEPTDTGYNFTQTLSNVT 226
>SB_41067| Best HMM Match : Ribosomal_L17 (HMM E-Value=1.7e-05)
Length = 236
Score = 29.5 bits (63), Expect = 3.0
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +1
Query: 85 SYRTKPPAE-PMISSGYINMQLEDNVPMFTKQKMNLNPSDLITHAAVSSDNLVVAMANGK 261
S R+KPP + MI G+I + E M TK+ +N ++ +V S VA +
Sbjct: 86 SQRSKPPPDLDMIEDGFILSESEAREKMITKKIVNRRSKKVVVLPSVLSKEEYVARCREE 145
Query: 262 LFRMDIRNPD 291
M + + D
Sbjct: 146 ASNMVMGDQD 155
>SB_49129| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 243
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 665 PITGIKFSQGCRNKKVLXICDNXHQN 742
P G++ SQG R K L I +N HQ+
Sbjct: 36 PPIGVEESQGTRRHKCLFIAENRHQS 61
>SB_22639| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 956
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 40 KMTSILDQYKQAAQASYRTKPPAEPMI 120
+M SILD +Q A+ S K P+EP I
Sbjct: 84 QMASILDSLRQEAECSLCHKTPSEPKI 110
>SB_35552| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1044
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -1
Query: 672 VMGXSAPFPMSKNLSPV-LFTGNEHFVIVRF*LSF 571
+MG +P+SKNLS V ++T F I RF + F
Sbjct: 495 LMGVVFKYPISKNLSMVAMYTSGSIFAITRFVVLF 529
>SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18)
Length = 1425
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = +1
Query: 334 SKLSGLFLDPLGCHLLMSFSSKTKDGCPELAYIHQKSSKLKFVSKIPN 477
S ++G + M+ KTKD + IH S KLK S I N
Sbjct: 351 SSVNGFGFKESDLDICMTLDGKTKDDVDPIKVIHDLSKKLKQHSDIRN 398
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,610,072
Number of Sequences: 59808
Number of extensions: 440032
Number of successful extensions: 904
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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