Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0677
         (750 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC001513-1|AAH01513.1|  580|Homo sapiens VPS18 protein protein.       120   6e-27
AF308802-1|AAG34679.1|  973|Homo sapiens vacuolar protein sortin...   120   6e-27
AB040908-1|BAA95999.1|  986|Homo sapiens KIAA1475 protein protein.    120   6e-27

>BC001513-1|AAH01513.1|  580|Homo sapiens VPS18 protein protein.
          Length = 580

 Score =  120 bits (289), Expect = 6e-27
 Identities = 66/202 (32%), Positives = 115/202 (56%), Gaps = 3/202 (1%)
 Frame = +1

Query: 43  MTSILDQYKQAAQASYRTKP--PAEPMISSGYINMQLEDNVPMFTKQKMNLNPSDLITHA 216
           M SILD+Y+ +   S   +P  P+  +  SGY+N QLE  VP+FTKQ+++  PS+ IT  
Sbjct: 1   MASILDEYENSLSRSAVLQPGCPSVGIPHSGYVNAQLEKEVPIFTKQRIDFTPSERITSL 60

Query: 217 AVSSDNLVVAMANGKLFRMDIRNPDSEQEIHYSKYCQPTSKLSGLFLDPLGCHLLMSFSS 396
            VSS+ L +++    L R+D+   +    +   +  +  +K+  +FLD  G HLL++ SS
Sbjct: 61  VVSSNQLCMSLGKDTLLRIDLGKANEPNHVELGR--KDDAKVHKMFLDHTGSHLLIALSS 118

Query: 397 KTKDGCPELAYIHQKSSKLKFVSKIPNYEITEVGWNFENTSNNMTGPILLGTSKGHLLET 576
                  E+ Y+++   K++ +++     +  VGWN    + + TGPIL+GT++GH+ E 
Sbjct: 119 ------TEVLYVNRNGQKVRPLARWKGQLVESVGWNKALGTESSTGPILVGTAQGHIFEA 172

Query: 577 ELEPNNDKMF-IASEQYWRQIF 639
           EL  +   +F  A + Y+R ++
Sbjct: 173 ELSASEGGLFGPAPDLYFRPLY 194


>AF308802-1|AAG34679.1|  973|Homo sapiens vacuolar protein sorting
           protein 18 protein.
          Length = 973

 Score =  120 bits (289), Expect = 6e-27
 Identities = 66/202 (32%), Positives = 115/202 (56%), Gaps = 3/202 (1%)
 Frame = +1

Query: 43  MTSILDQYKQAAQASYRTKP--PAEPMISSGYINMQLEDNVPMFTKQKMNLNPSDLITHA 216
           M SILD+Y+ +   S   +P  P+  +  SGY+N QLE  VP+FTKQ+++  PS+ IT  
Sbjct: 1   MASILDEYENSLSRSAVLQPGCPSVGIPHSGYVNAQLEKEVPIFTKQRIDFTPSERITSL 60

Query: 217 AVSSDNLVVAMANGKLFRMDIRNPDSEQEIHYSKYCQPTSKLSGLFLDPLGCHLLMSFSS 396
            VSS+ L +++    L R+D+   +    +   +  +  +K+  +FLD  G HLL++ SS
Sbjct: 61  VVSSNQLCMSLGKDTLLRIDLGKANEPNHVELGR--KDDAKVHKMFLDHTGSHLLIALSS 118

Query: 397 KTKDGCPELAYIHQKSSKLKFVSKIPNYEITEVGWNFENTSNNMTGPILLGTSKGHLLET 576
                  E+ Y+++   K++ +++     +  VGWN    + + TGPIL+GT++GH+ E 
Sbjct: 119 ------TEVLYVNRNGQKVRPLARWKGQLVESVGWNKALGTESSTGPILVGTAQGHIFEA 172

Query: 577 ELEPNNDKMF-IASEQYWRQIF 639
           EL  +   +F  A + Y+R ++
Sbjct: 173 ELSASEGGLFGPAPDLYFRPLY 194


>AB040908-1|BAA95999.1|  986|Homo sapiens KIAA1475 protein protein.
          Length = 986

 Score =  120 bits (289), Expect = 6e-27
 Identities = 66/202 (32%), Positives = 115/202 (56%), Gaps = 3/202 (1%)
 Frame = +1

Query: 43  MTSILDQYKQAAQASYRTKP--PAEPMISSGYINMQLEDNVPMFTKQKMNLNPSDLITHA 216
           M SILD+Y+ +   S   +P  P+  +  SGY+N QLE  VP+FTKQ+++  PS+ IT  
Sbjct: 14  MASILDEYENSLSRSAVLQPGCPSVGIPHSGYVNAQLEKEVPIFTKQRIDFTPSERITSL 73

Query: 217 AVSSDNLVVAMANGKLFRMDIRNPDSEQEIHYSKYCQPTSKLSGLFLDPLGCHLLMSFSS 396
            VSS+ L +++    L R+D+   +    +   +  +  +K+  +FLD  G HLL++ SS
Sbjct: 74  VVSSNQLCMSLGKDTLLRIDLGKANEPNHVELGR--KDDAKVHKMFLDHTGSHLLIALSS 131

Query: 397 KTKDGCPELAYIHQKSSKLKFVSKIPNYEITEVGWNFENTSNNMTGPILLGTSKGHLLET 576
                  E+ Y+++   K++ +++     +  VGWN    + + TGPIL+GT++GH+ E 
Sbjct: 132 ------TEVLYVNRNGQKVRPLARWKGQLVESVGWNKALGTESSTGPILVGTAQGHIFEA 185

Query: 577 ELEPNNDKMF-IASEQYWRQIF 639
           EL  +   +F  A + Y+R ++
Sbjct: 186 ELSASEGGLFGPAPDLYFRPLY 207


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,289,917
Number of Sequences: 237096
Number of extensions: 2233535
Number of successful extensions: 3554
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3545
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9015132854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)