Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0677
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23522-1|AAC46819.3|  962|Caenorhabditis elegans Hypothetical pr...    42   4e-04
Z68161-9|CAA92298.2|  688|Caenorhabditis elegans Hypothetical pr...    31   0.87 
AC006632-10|AAK85471.1|  293|Caenorhabditis elegans Hypothetical...    29   2.7  
Z69360-6|CAA93282.1|  599|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>U23522-1|AAC46819.3|  962|Caenorhabditis elegans Hypothetical
           protein W06B4.3 protein.
          Length = 962

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
 Frame = +1

Query: 427 YIHQKSSKLKFVSKIPNYEITEVGWNFE-NTSNNMTGPILLGTSKGHLLE 573
           YIH KS+    + K+    +T VGWN + +   + TGPILLGT++G ++E
Sbjct: 34  YIHLKSNAFHHLKKL-RCVVTAVGWNPDYSKETDTTGPILLGTAQGSIIE 82


>Z68161-9|CAA92298.2|  688|Caenorhabditis elegans Hypothetical
           protein F20C5.5 protein.
          Length = 688

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +1

Query: 133 INMQLEDNVPMFTKQKMNLNPSDLITHAAVSSDNLVVAM 249
           I  +LED V   TK   +LNPS L+T      D L+V +
Sbjct: 255 IIQKLEDEVDYLTKNLESLNPSQLVTSLENKDDYLLVTV 293


>AC006632-10|AAK85471.1|  293|Caenorhabditis elegans Hypothetical
           protein F28A10.5 protein.
          Length = 293

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
 Frame = +1

Query: 118 ISSGYINMQLED-NVPMFTKQKMNLNPSDLIT-HAA 219
           I+S  IN +LE  ++P FT+Q   LNP+ L T H+A
Sbjct: 27  ITSNQINRKLEQCSLPSFTRQARVLNPAALYTSHSA 62


>Z69360-6|CAA93282.1|  599|Caenorhabditis elegans Hypothetical
           protein F25H8.6 protein.
          Length = 599

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
 Frame = +1

Query: 97  KPPAEPMISSGYINM-----QLEDNVPMFTKQKMNLNPSDL 204
           KPPA P  S+  +N+     Q ++  PMF  Q +   P+D+
Sbjct: 260 KPPAPPTPSNSILNLSQSQNQCQNQNPMFQSQNIKNEPTDV 300


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,331,344
Number of Sequences: 27780
Number of extensions: 362222
Number of successful extensions: 968
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)