Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0677
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   7.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.3  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -3

Query: 109 QQVALFYRKPVLLAYTDLISKSFWKK 32
           Q++AL+Y KP   A         WKK
Sbjct: 404 QEMALYYLKPSYDAQEPAWKTHVWKK 429



 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 177 ENEPQPIGFNHSRC 218
           E EPQPIG   S+C
Sbjct: 698 EAEPQPIGKALSKC 711


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 514 TSNNMTGPILLGTSKGHLLETE 579
           T + +TG   L  +KG L+ TE
Sbjct: 183 TKHRLTGETRLSATKGRLVITE 204


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 572 KLS*NRTMTKCSLPVNSTG 628
           K S N  + KC  P+N +G
Sbjct: 581 KTSPNSAVRKCMSPINGSG 599


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,560
Number of Sequences: 438
Number of extensions: 4358
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)