Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0677
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g12470.1 68414.m01441 Pep3/Vps18/deep orange family protein c...    51   9e-07
At4g30700.1 68417.m04351 pentatricopeptide (PPR) repeat-containi...    38   0.007
At1g12110.1 68414.m01402 nitrate/chlorate transporter (NRT1.1) (...    30   1.9  
At4g26640.2 68417.m03839 WRKY family transcription factor contai...    29   3.3  
At3g47030.1 68416.m05107 F-box family protein contains F-box dom...    29   3.3  
At1g60095.1 68414.m06771 jacalin lectin family protein contains ...    29   4.4  
At4g26640.1 68417.m03838 WRKY family transcription factor contai...    28   5.8  
At3g18200.1 68416.m02315 nodulin MtN21 family protein similar to...    28   7.6  

>At1g12470.1 68414.m01441 Pep3/Vps18/deep orange family protein
           contains Pfam profile PF05131: Pep3/Vps18/deep orange
           family; similar to Vacuolar protein sorting 18 (hVPS18)
           (SP:Q9P253) {Homo sapiens}
          Length = 994

 Score = 50.8 bits (116), Expect = 9e-07
 Identities = 34/133 (25%), Positives = 60/133 (45%)
 Frame = +1

Query: 202 LITHAAVSSDNLVVAMANGKLFRMDIRNPDSEQEIHYSKYCQPTSKLSGLFLDPLGCHLL 381
           +IT  A  +D +V+  + G + R D     S  +I  +        +  +F+DP G H +
Sbjct: 23  MITCMAAGNDVIVLGTSKGWIIRYDF-GVGSSNDIDLAVGRTGEQSIHKVFVDPGGSHCI 81

Query: 382 MSFSSKTKDGCPELAYIHQKSSKLKFVSKIPNYEITEVGWNFENTSNNMTGPILLGTSKG 561
              ++ T  G  E  Y H K  K + +S++    +  V WN +  +   T  I+LGT  G
Sbjct: 82  ---ATVTGVGGAETFYTHAKWLKPRVLSRLKGLLVNAVAWNRQQITEVSTKEIILGTQDG 138

Query: 562 HLLETELEPNNDK 600
            L E  ++  + +
Sbjct: 139 QLFEMAVDEKDKR 151


>At4g30700.1 68417.m04351 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 792

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 1/105 (0%)
 Frame = +1

Query: 4   AVVGVVIRTVFSKMTSILDQYKQAAQASYRTKPPAEPMISSGYINMQLEDNVPMFTK-QK 180
           A V   + TV+SK+  I    K   ++  ++ P    MIS    N   ED + +F + QK
Sbjct: 354 ASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQK 413

Query: 181 MNLNPSDLITHAAVSSDNLVVAMANGKLFRMDIRNPDSEQEIHYS 315
              +P+ +     +S+   + A++ GK     +R+ D E  I+ S
Sbjct: 414 SEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVS 458


>At1g12110.1 68414.m01402 nitrate/chlorate transporter (NRT1.1)
           (CHL1) identical to nitrate/chlorate transporter
           SP:Q05085 from [Arabidopsis thaliana]; contains Pfam
           profile: PF00854 POT family
          Length = 590

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -2

Query: 188 RFIFCFVNIGTLSSSCILMYPEDIMGSAGGF 96
           RF FC +N+G+L +  +L+Y +D +G   G+
Sbjct: 192 RFFFC-INVGSLLAVTVLVYVQDDVGRKWGY 221


>At4g26640.2 68417.m03839 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 557

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/68 (27%), Positives = 27/68 (39%)
 Frame = +1

Query: 295 EQEIHYSKYCQPTSKLSGLFLDPLGCHLLMSFSSKTKDGCPELAYIHQKSSKLKFVSKIP 474
           E  +  S      S  +G    P   H+  S SS T  G  +  +  QKSS+ +F     
Sbjct: 67  ESPVFISNIKPEPSPTTGSLFKPRPVHISASSSSYTGRGFHQNTFTEQKSSEFEFRPPAS 126

Query: 475 NYEITEVG 498
           N    E+G
Sbjct: 127 NMVYAELG 134


>At3g47030.1 68416.m05107 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 414

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -2

Query: 566 KCPLEVPNKIGPVMLLDVFSK 504
           KCP+E P +I   +L+DVFS+
Sbjct: 25  KCPIEKPEEIPDDLLIDVFSR 45


>At1g60095.1 68414.m06771 jacalin lectin family protein contains
           similarity to myrosinase-binding protein homolog
           [Arabidopsis thaliana] GI:2997767;
          Length = 531

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 20/83 (24%), Positives = 32/83 (38%)
 Frame = +1

Query: 370 CHLLMSFSSKTKDGCPELAYIHQKSSKLKFVSKIPNYEITEVGWNFENTSNNMTGPILLG 549
           C++   + +K K    E    +    + +FV   PN  IT V       S      +   
Sbjct: 272 CYVEFDYDNKGKVEKREHGMFYSWVQQGEFVVDYPNEFITSVEGTMRTESFMQVASLTFK 331

Query: 550 TSKGHLLETELEPNNDKMFIASE 618
           TSKG    T   P++ K  + S+
Sbjct: 332 TSKGRTSSTFGSPSDSKFLLESK 354


>At4g26640.1 68417.m03838 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 485

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +1

Query: 334 SKLSGLFLDPLGCHLLMSFSSKTKDGCPELAYIHQKSSKLKFVSKIPNYEITEVG 498
           S  +G    P   H+  S SS T  G  +  +  QKSS+ +F     N    E+G
Sbjct: 8   SPTTGSLFKPRPVHISASSSSYTGRGFHQNTFTEQKSSEFEFRPPASNMVYAELG 62


>At3g18200.1 68416.m02315 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 360

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +2

Query: 230 IT*WWLWRMGNCLEWT*GILILSKKFTTQNIVSQPLN*AVCFW 358
           +T  WL+ MG+CL W  G ++L      Q      L    CF+
Sbjct: 181 LTLGWLYLMGHCLSWA-GWMVLQAPVLKQYPAKLTLTSFTCFF 222


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,174,777
Number of Sequences: 28952
Number of extensions: 330945
Number of successful extensions: 703
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)