Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0673
         (600 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5DBL3 Cluster: Putative uncharacterized protein; n=1; ...    34   2.2  
UniRef50_Q9Z882 Cluster: Probable outer membrane protein pmp16 p...    34   2.2  
UniRef50_Q9XHV3 Cluster: 10A19I.13; n=2; Oryza sativa (japonica ...    33   3.9  
UniRef50_A3Q6T3 Cluster: Putative uncharacterized protein precur...    33   5.1  

>UniRef50_A5DBL3 Cluster: Putative uncharacterized protein; n=1;
           Pichia guilliermondii|Rep: Putative uncharacterized
           protein - Pichia guilliermondii (Yeast) (Candida
           guilliermondii)
          Length = 526

 Score = 34.3 bits (75), Expect = 2.2
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = -3

Query: 334 TYSIDGAISSSEPIEKKKAMGGEKRPPHQEANRCRGGDHIHLHLKRPTHQQQ 179
           T + DG+ S SEP E+ K      R       RCRGG ++H       +Q++
Sbjct: 465 TKTFDGSTSHSEPGERPKRGSWNSRGRGNNRRRCRGGANLHYVRNEQLNQEK 516


>UniRef50_Q9Z882 Cluster: Probable outer membrane protein pmp16
           precursor; n=3; Chlamydophila pneumoniae|Rep: Probable
           outer membrane protein pmp16 precursor - Chlamydia
           pneumoniae (Chlamydophila pneumoniae)
          Length = 952

 Score = 34.3 bits (75), Expect = 2.2
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
 Frame = -3

Query: 226 GDHIHLHLKRPTHQQQA---CYNIQTRSSSSCSYKPRQRGF 113
           GDH HLH   P+HQ+QA   CY+    ++  CS+  +Q+ +
Sbjct: 774 GDH-HLHSLHPSHQEQAEGTCYSHTLAAAIGCSFPWQQKSY 813


>UniRef50_Q9XHV3 Cluster: 10A19I.13; n=2; Oryza sativa (japonica
           cultivar-group)|Rep: 10A19I.13 - Oryza sativa subsp.
           japonica (Rice)
          Length = 539

 Score = 33.5 bits (73), Expect = 3.9
 Identities = 30/78 (38%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
 Frame = -3

Query: 325 IDGAISSSEPIEKKKAMGGEKRPPHQEANR---CRGGDHIHLHLKR-----PTHQQQACY 170
           +DG I     I+K+K   GE+  P +E  R   CR G    L L+R      T+Q +   
Sbjct: 10  MDGWIEDRREIKKRKGPLGEEMAPGKEEERCGGCRDGVGRVLLLERRFFHAKTNQYKTSR 69

Query: 169 NIQTRSSSSCSYKPRQRG 116
            IQ  SSSS S  PRQ G
Sbjct: 70  AIQPPSSSSSS--PRQEG 85


>UniRef50_A3Q6T3 Cluster: Putative uncharacterized protein
           precursor; n=6; Mycobacterium|Rep: Putative
           uncharacterized protein precursor - Mycobacterium sp.
           (strain JLS)
          Length = 190

 Score = 33.1 bits (72), Expect = 5.1
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +1

Query: 52  EIQSAMGGGGPLTRVRNGPRGNPSAWACNCSLMNCGFVCCSRLAV--GGLDV 201
           EI  +  GGGP+ R R      P+ WA         F+ CS + V  GG+++
Sbjct: 127 EISVSSFGGGPIERYRIDGASMPTEWATGQLATRAAFIVCSHIQVVYGGVNL 178


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 497,306,513
Number of Sequences: 1657284
Number of extensions: 8791668
Number of successful extensions: 25527
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25508
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 42317807226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)