BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0673 (600 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 26 3.7 SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l... 25 8.5 >SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1215 Score = 26.2 bits (55), Expect = 3.7 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = +2 Query: 224 SASTSICFLMGRPLLSSHRFFFLN 295 S SI FL G+PL+ S + FF+N Sbjct: 927 SPKKSIDFLEGKPLIDSVKEFFVN 950 >SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine ligase |Schizosaccharomyces pombe|chr 2|||Manual Length = 788 Score = 25.0 bits (52), Expect = 8.5 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%) Frame = -3 Query: 379 AHHALEXKRL*RCLRTYSIDGAI--SSSEPIEKKKAMGGEKRPPHQEAN 239 AHHAL KR R + TY G + +E +++ K + R P +A+ Sbjct: 423 AHHALNPKRKTREILTYENSGVSVDNGNEFVQRIKDLVKSTRRPGADAD 471 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,984,237 Number of Sequences: 5004 Number of extensions: 33216 Number of successful extensions: 87 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 85 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 87 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 262236260 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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