Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0673
         (600 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1171 - 9321652-9321712,9322997-9323199                           31   0.93 
12_02_1241 - 27286095-27286979                                         30   1.6  
05_04_0454 + 21383068-21384525                                         28   6.6  
07_03_0117 + 13589997-13590998                                         27   8.7  
03_05_0267 - 22538631-22539452                                         27   8.7  

>01_01_1171 - 9321652-9321712,9322997-9323199
          Length = 87

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 277 MGGEKRPPHQEANRCRGGDHIHLHLKRPTHQ 185
           M G +RP   E+N   GG  +  H +RP H+
Sbjct: 1   MAGPRRPGTHESNPMSGGTSVARHARRPMHR 31


>12_02_1241 - 27286095-27286979
          Length = 294

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 109 RGNPSAWACNCSLMNCGFVC 168
           RG P A AC C+L+ C  +C
Sbjct: 211 RGAPVALACQCALLGCNLLC 230


>05_04_0454 + 21383068-21384525
          Length = 485

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 1   QYLSPXSGTRPTEKIRREIQSAMGGGGPLTR 93
           +Y  P    R  ++ RR  QS  GGGGP  R
Sbjct: 446 KYDHPEQQQRAYQQHRRNTQSTAGGGGPARR 476


>07_03_0117 + 13589997-13590998
          Length = 333

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 19  SGTRPTEKIRREIQSAMGGGGPLTRVR 99
           + T P + +RR+IQ   GGGG L   R
Sbjct: 254 TATYPLDVVRRQIQLGGGGGGTLQAFR 280


>03_05_0267 - 22538631-22539452
          Length = 273

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +1

Query: 73  GGGPLTRVRNGPRGNPSAWACNCS 144
           GGGP  R R  P   P  W C+ S
Sbjct: 163 GGGPTVRRRASPPARPRWWPCSPS 186


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,135,443
Number of Sequences: 37544
Number of extensions: 271703
Number of successful extensions: 1002
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)