Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0673
         (600 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26672| Best HMM Match : Exo_endo_phos (HMM E-Value=0.46)            29   2.2  
SB_52673| Best HMM Match : Lectin_C (HMM E-Value=0.017)                28   6.6  
SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_22789| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_26672| Best HMM Match : Exo_endo_phos (HMM E-Value=0.46)
          Length = 1232

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/56 (32%), Positives = 24/56 (42%)
 Frame = -3

Query: 286 KKAMGGEKRPPHQEANRCRGGDHIHLHLKRPTHQQQACYNIQTRSSSSCSYKPRQR 119
           +KA    KRP HQ    C G    H   KR  HQ++   +   ++ SS      QR
Sbjct: 730 RKAHSSGKRPLHQRKTPCSGVRKAHSSGKRSLHQRKTPSSGVRKAHSSGKRSLHQR 785


>SB_52673| Best HMM Match : Lectin_C (HMM E-Value=0.017)
          Length = 269

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +1

Query: 40  KIRREIQSAMGGGGPLTRVRNGPRGNPSAWACNCSLMNCGFV 165
           K+RRE++ + GGG    R+        S W CN     C FV
Sbjct: 109 KMRREVRES-GGGRAFCRLAVKAEPCTSPWQCNSLTDTCYFV 149


>SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2978

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -3

Query: 292 EKKKAMGGEKRPPHQEANRCRGGDHIHL-HLKRPTHQQQACYNIQ 161
           EKKK    +K+  +QEA R +    I   H K  ++++Q   N+Q
Sbjct: 5   EKKKVKQAQKKRENQEAKRQKNAAKIKAKHEKGASNEEQKASNLQ 49


>SB_22789| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 796

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 164 TNPQFIKLQLQAQAEGFPRGPFRTLVRGPPPP 69
           + P +++  +   +   PRGP     +GPPPP
Sbjct: 309 SEPGYVRSAVATTSHSLPRGPVHA-KKGPPPP 339


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,145,453
Number of Sequences: 59808
Number of extensions: 265022
Number of successful extensions: 698
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)