Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0673
         (600 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT016098-1|AAV36983.1| 1873|Drosophila melanogaster LD34837p pro...    32   0.69 
AE014296-2299|ABC66150.1| 1557|Drosophila melanogaster CG17689-P...    32   0.69 
AE014296-2298|AAF49803.3| 1873|Drosophila melanogaster CG17689-P...    32   0.69 
AY051997-1|AAK93421.1|  721|Drosophila melanogaster LD46453p pro...    31   1.2  
AJ556820-1|CAD89219.3| 1641|Drosophila melanogaster Tho2 protein...    31   1.2  
AE014134-342|AAF51302.2| 1641|Drosophila melanogaster CG31671-PA...    31   1.2  
AY118360-1|AAM48389.1|  195|Drosophila melanogaster RE05342p pro...    29   4.8  
AF521096-1|AAM77748.1|  195|Drosophila melanogaster RNA-binding ...    29   4.8  
AE014296-983|AAF50758.2|  195|Drosophila melanogaster CG17334-PA...    29   4.8  
AE014134-2707|AAN10938.1| 2282|Drosophila melanogaster CG31817-P...    29   6.4  

>BT016098-1|AAV36983.1| 1873|Drosophila melanogaster LD34837p
           protein.
          Length = 1873

 Score = 31.9 bits (69), Expect = 0.69
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -3

Query: 328 SIDGAISSSEPIEKKKAMGGEKRPPHQEANRCRGGDHIHLHLKRPTH 188
           S+  + + +  +  KK+   EKRPP   +    GG H+H H    TH
Sbjct: 181 SLSNSSTGAASVSSKKS---EKRPPSANSTASGGGHHLHHHHLHQTH 224


>AE014296-2299|ABC66150.1| 1557|Drosophila melanogaster CG17689-PB,
           isoform B protein.
          Length = 1557

 Score = 31.9 bits (69), Expect = 0.69
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -3

Query: 328 SIDGAISSSEPIEKKKAMGGEKRPPHQEANRCRGGDHIHLHLKRPTH 188
           S+  + + +  +  KK+   EKRPP   +    GG H+H H    TH
Sbjct: 181 SLSNSSTGAASVSSKKS---EKRPPSANSTASGGGHHLHHHHLHQTH 224


>AE014296-2298|AAF49803.3| 1873|Drosophila melanogaster CG17689-PA,
           isoform A protein.
          Length = 1873

 Score = 31.9 bits (69), Expect = 0.69
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -3

Query: 328 SIDGAISSSEPIEKKKAMGGEKRPPHQEANRCRGGDHIHLHLKRPTH 188
           S+  + + +  +  KK+   EKRPP   +    GG H+H H    TH
Sbjct: 181 SLSNSSTGAASVSSKKS---EKRPPSANSTASGGGHHLHHHHLHQTH 224


>AY051997-1|AAK93421.1|  721|Drosophila melanogaster LD46453p
           protein.
          Length = 721

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +2

Query: 14  RXRERDPLRRSGEKFNRQWGGAAPLR 91
           R RE+ P  RS EKF+R+ GGA+  R
Sbjct: 678 RHREKSPRERSHEKFDRERGGASGSR 703


>AJ556820-1|CAD89219.3| 1641|Drosophila melanogaster Tho2 protein
            protein.
          Length = 1641

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +2

Query: 14   RXRERDPLRRSGEKFNRQWGGAAPLR 91
            R RE+ P  RS EKF+R+ GGA+  R
Sbjct: 1598 RHREKSPRERSHEKFDRERGGASGSR 1623


>AE014134-342|AAF51302.2| 1641|Drosophila melanogaster CG31671-PA
            protein.
          Length = 1641

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +2

Query: 14   RXRERDPLRRSGEKFNRQWGGAAPLR 91
            R RE+ P  RS EKF+R+ GGA+  R
Sbjct: 1598 RHREKSPRERSHEKFDRERGGASGSR 1623


>AY118360-1|AAM48389.1|  195|Drosophila melanogaster RE05342p
           protein.
          Length = 195

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = -3

Query: 259 PPHQEANRCRGGDHIHLHL--KRPTHQQQACYNIQTRSSSSCS 137
           P  +  +RCRG DH+H     K  T       +I   SSSS +
Sbjct: 145 PQPKRCHRCRGEDHLHADCPHKNVTQSHSNSKSISNNSSSSAA 187


>AF521096-1|AAM77748.1|  195|Drosophila melanogaster RNA-binding
           protein LIN-28 protein.
          Length = 195

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = -3

Query: 259 PPHQEANRCRGGDHIHLHL--KRPTHQQQACYNIQTRSSSSCS 137
           P  +  +RCRG DH+H     K  T       +I   SSSS +
Sbjct: 145 PQPKRCHRCRGEDHLHADCPHKNVTQSHSNSKSISNNSSSSAA 187


>AE014296-983|AAF50758.2|  195|Drosophila melanogaster CG17334-PA
           protein.
          Length = 195

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = -3

Query: 259 PPHQEANRCRGGDHIHLHL--KRPTHQQQACYNIQTRSSSSCS 137
           P  +  +RCRG DH+H     K  T       +I   SSSS +
Sbjct: 145 PQPKRCHRCRGEDHLHADCPHKNVTQSHSNSKSISNNSSSSAA 187


>AE014134-2707|AAN10938.1| 2282|Drosophila melanogaster CG31817-PA
           protein.
          Length = 2282

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = -3

Query: 292 EKKKAMGGEKRPPHQEANRCRGGDHIHLHLKRPTHQQQACYNIQTRSSSS 143
           +KKK +  +KR   +  + C          K+PT + Q C N Q + S +
Sbjct: 591 KKKKLISTKKRKSSRSCSCCSRTSSRKRSAKKPTTKSQVCENCQCKRSDA 640


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,122,543
Number of Sequences: 53049
Number of extensions: 456819
Number of successful extensions: 1490
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1488
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2441585082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)