BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0673 (600 letters) Database: fruitfly 53,049 sequences; 24,988,368 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BT016098-1|AAV36983.1| 1873|Drosophila melanogaster LD34837p pro... 32 0.69 AE014296-2299|ABC66150.1| 1557|Drosophila melanogaster CG17689-P... 32 0.69 AE014296-2298|AAF49803.3| 1873|Drosophila melanogaster CG17689-P... 32 0.69 AY051997-1|AAK93421.1| 721|Drosophila melanogaster LD46453p pro... 31 1.2 AJ556820-1|CAD89219.3| 1641|Drosophila melanogaster Tho2 protein... 31 1.2 AE014134-342|AAF51302.2| 1641|Drosophila melanogaster CG31671-PA... 31 1.2 AY118360-1|AAM48389.1| 195|Drosophila melanogaster RE05342p pro... 29 4.8 AF521096-1|AAM77748.1| 195|Drosophila melanogaster RNA-binding ... 29 4.8 AE014296-983|AAF50758.2| 195|Drosophila melanogaster CG17334-PA... 29 4.8 AE014134-2707|AAN10938.1| 2282|Drosophila melanogaster CG31817-P... 29 6.4 >BT016098-1|AAV36983.1| 1873|Drosophila melanogaster LD34837p protein. Length = 1873 Score = 31.9 bits (69), Expect = 0.69 Identities = 15/47 (31%), Positives = 23/47 (48%) Frame = -3 Query: 328 SIDGAISSSEPIEKKKAMGGEKRPPHQEANRCRGGDHIHLHLKRPTH 188 S+ + + + + KK+ EKRPP + GG H+H H TH Sbjct: 181 SLSNSSTGAASVSSKKS---EKRPPSANSTASGGGHHLHHHHLHQTH 224 >AE014296-2299|ABC66150.1| 1557|Drosophila melanogaster CG17689-PB, isoform B protein. Length = 1557 Score = 31.9 bits (69), Expect = 0.69 Identities = 15/47 (31%), Positives = 23/47 (48%) Frame = -3 Query: 328 SIDGAISSSEPIEKKKAMGGEKRPPHQEANRCRGGDHIHLHLKRPTH 188 S+ + + + + KK+ EKRPP + GG H+H H TH Sbjct: 181 SLSNSSTGAASVSSKKS---EKRPPSANSTASGGGHHLHHHHLHQTH 224 >AE014296-2298|AAF49803.3| 1873|Drosophila melanogaster CG17689-PA, isoform A protein. Length = 1873 Score = 31.9 bits (69), Expect = 0.69 Identities = 15/47 (31%), Positives = 23/47 (48%) Frame = -3 Query: 328 SIDGAISSSEPIEKKKAMGGEKRPPHQEANRCRGGDHIHLHLKRPTH 188 S+ + + + + KK+ EKRPP + GG H+H H TH Sbjct: 181 SLSNSSTGAASVSSKKS---EKRPPSANSTASGGGHHLHHHHLHQTH 224 >AY051997-1|AAK93421.1| 721|Drosophila melanogaster LD46453p protein. Length = 721 Score = 31.1 bits (67), Expect = 1.2 Identities = 14/26 (53%), Positives = 18/26 (69%) Frame = +2 Query: 14 RXRERDPLRRSGEKFNRQWGGAAPLR 91 R RE+ P RS EKF+R+ GGA+ R Sbjct: 678 RHREKSPRERSHEKFDRERGGASGSR 703 >AJ556820-1|CAD89219.3| 1641|Drosophila melanogaster Tho2 protein protein. Length = 1641 Score = 31.1 bits (67), Expect = 1.2 Identities = 14/26 (53%), Positives = 18/26 (69%) Frame = +2 Query: 14 RXRERDPLRRSGEKFNRQWGGAAPLR 91 R RE+ P RS EKF+R+ GGA+ R Sbjct: 1598 RHREKSPRERSHEKFDRERGGASGSR 1623 >AE014134-342|AAF51302.2| 1641|Drosophila melanogaster CG31671-PA protein. Length = 1641 Score = 31.1 bits (67), Expect = 1.2 Identities = 14/26 (53%), Positives = 18/26 (69%) Frame = +2 Query: 14 RXRERDPLRRSGEKFNRQWGGAAPLR 91 R RE+ P RS EKF+R+ GGA+ R Sbjct: 1598 RHREKSPRERSHEKFDRERGGASGSR 1623 >AY118360-1|AAM48389.1| 195|Drosophila melanogaster RE05342p protein. Length = 195 Score = 29.1 bits (62), Expect = 4.8 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%) Frame = -3 Query: 259 PPHQEANRCRGGDHIHLHL--KRPTHQQQACYNIQTRSSSSCS 137 P + +RCRG DH+H K T +I SSSS + Sbjct: 145 PQPKRCHRCRGEDHLHADCPHKNVTQSHSNSKSISNNSSSSAA 187 >AF521096-1|AAM77748.1| 195|Drosophila melanogaster RNA-binding protein LIN-28 protein. Length = 195 Score = 29.1 bits (62), Expect = 4.8 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%) Frame = -3 Query: 259 PPHQEANRCRGGDHIHLHL--KRPTHQQQACYNIQTRSSSSCS 137 P + +RCRG DH+H K T +I SSSS + Sbjct: 145 PQPKRCHRCRGEDHLHADCPHKNVTQSHSNSKSISNNSSSSAA 187 >AE014296-983|AAF50758.2| 195|Drosophila melanogaster CG17334-PA protein. Length = 195 Score = 29.1 bits (62), Expect = 4.8 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%) Frame = -3 Query: 259 PPHQEANRCRGGDHIHLHL--KRPTHQQQACYNIQTRSSSSCS 137 P + +RCRG DH+H K T +I SSSS + Sbjct: 145 PQPKRCHRCRGEDHLHADCPHKNVTQSHSNSKSISNNSSSSAA 187 >AE014134-2707|AAN10938.1| 2282|Drosophila melanogaster CG31817-PA protein. Length = 2282 Score = 28.7 bits (61), Expect = 6.4 Identities = 14/50 (28%), Positives = 23/50 (46%) Frame = -3 Query: 292 EKKKAMGGEKRPPHQEANRCRGGDHIHLHLKRPTHQQQACYNIQTRSSSS 143 +KKK + +KR + + C K+PT + Q C N Q + S + Sbjct: 591 KKKKLISTKKRKSSRSCSCCSRTSSRKRSAKKPTTKSQVCENCQCKRSDA 640 Database: fruitfly Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 24,988,368 Number of sequences in database: 53,049 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 23,122,543 Number of Sequences: 53049 Number of extensions: 456819 Number of successful extensions: 1490 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 1388 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1488 length of database: 24,988,368 effective HSP length: 81 effective length of database: 20,691,399 effective search space used: 2441585082 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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