Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0673
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z81503-1|CAB04111.1|  305|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical protein
            F30H5.3 protein.
          Length = 1599

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 76   GGPLTRVRNGPRGNPSAWACNCSLMNCGFVCCSRLAVGG 192
            G P+    +G    P+ + C  S ++  F CCS ++ GG
Sbjct: 1479 GTPVQCSNSGSNSCPAGYKCQKSTLSNRFQCCSSVSGGG 1517


>Z81503-1|CAB04111.1|  305|Caenorhabditis elegans Hypothetical
           protein F14F7.1 protein.
          Length = 305

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 45  PARNSIGNGGGRPPYEGAERAPGKP 119
           PA +   +GGGRP   G + APG+P
Sbjct: 234 PAGHPGSSGGGRPGPAGPKGAPGQP 258


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,363,251
Number of Sequences: 27780
Number of extensions: 210874
Number of successful extensions: 721
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)