Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0673
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   3.0  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   4.0  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   9.2  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   9.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.2  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 321 MALLVPQSRLRKKKRWEERSGRPIKKQIDVEA 226
           +A +V  S L  + + +E + RP+ KQID  A
Sbjct: 321 IASVVKSSELAVRIQRQENNIRPMVKQIDTVA 352


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 189 TNSKPATTYKPAVHQAAVT 133
           T +KP + Y  + H+AA+T
Sbjct: 255 TKTKPTSPYHVSDHKAAIT 273


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 43  IRREIQSAMGGGGPLTR 93
           IRR++ SA+GG  P  R
Sbjct: 562 IRRKLGSALGGWHPSDR 578


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 273 EERSGRPIKKQIDVEAEII 217
           E+RSGRP++   D+   II
Sbjct: 60  EKRSGRPVEVDDDLIKAII 78


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +3

Query: 39   EDPARNSIGNGGGRPPYEGAERAP 110
            ED +       GGRP  E  ER P
Sbjct: 1350 EDESYRGPSASGGRPVPERPERVP 1373


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,039
Number of Sequences: 438
Number of extensions: 2742
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)