Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0671
         (428 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    21   3.8  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   3.8  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   5.0  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   5.0  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   5.0  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   5.0  
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          20   8.7  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       20   8.7  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           20   8.7  

>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 188 SDNYEYVPGXRRSPRRYA 241
           S+N+ Y+P     P +YA
Sbjct: 62  SENFYYLPAMSTGPLKYA 79


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 262 PEPEVPPPGLEALAPPS 312
           P P+VPP  L  + PP+
Sbjct: 176 PLPQVPPLPLPPIFPPT 192


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -1

Query: 152 HTPPCRPAGWNP 117
           H PP  P G NP
Sbjct: 743 HQPPRNPVGTNP 754


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -1

Query: 152 HTPPCRPAGWNP 117
           H PP  P G NP
Sbjct: 635 HQPPRNPVGTNP 646


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +1

Query: 73  QADHPRQVQRXHQVAGFQPAGRQG 144
           Q  HP+  Q  HQ       G+QG
Sbjct: 172 QEQHPQHHQPHHQQQHMMYGGQQG 195


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +1

Query: 73  QADHPRQVQRXHQVAGFQPAGRQG 144
           Q  HP+  Q  HQ       G+QG
Sbjct: 174 QEQHPQHHQPHHQQQHMMYGGQQG 197


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 11/40 (27%), Positives = 15/40 (37%)
 Frame = +1

Query: 262 PEPEVPPPGLEALAPPSXXSIKPTFHTTLKPTCNNHLXTS 381
           P+   PP     L  P+   I+ T     KPT      T+
Sbjct: 55  PQYNAPPYMSSVLQLPTVTEIQETQPQRTKPTAGKRARTA 94


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 9/25 (36%), Positives = 10/25 (40%)
 Frame = +1

Query: 280 PPGLEALAPPSXXSIKPTFHTTLKP 354
           PP  E L  P     +    TTL P
Sbjct: 108 PPNSEPLVSPKSEKEEKDMETTLTP 132


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 11/40 (27%), Positives = 15/40 (37%)
 Frame = +1

Query: 262 PEPEVPPPGLEALAPPSXXSIKPTFHTTLKPTCNNHLXTS 381
           P+   PP     L  P+   I+ T     KPT      T+
Sbjct: 46  PQYNAPPYMSSVLQLPTVTEIQETQPQRTKPTAGKRARTA 85


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,134
Number of Sequences: 336
Number of extensions: 1314
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9460170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)