Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0671
         (428 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...    29   0.31 
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...    28   0.53 
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...    26   2.2  
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    25   3.8  
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|...    24   8.7  
SPBC409.09c |mis13|cnl1|kinetochore protein Mis13|Schizosaccharo...    24   8.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    24   8.7  

>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score = 29.1 bits (62), Expect = 0.31
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +3

Query: 162 QKELEGIYNPIITNMYQ 212
           QKELEG+ NPI+  +YQ
Sbjct: 594 QKELEGVANPIMAKIYQ 610



 Score = 27.5 bits (58), Expect = 0.93
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +2

Query: 86  LDKC-NDXIKWLDSNQLADKEEYE 154
           +DK   + I+WLD N  A K+EYE
Sbjct: 568 IDKAVKETIEWLDHNTTAAKDEYE 591


>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score = 28.3 bits (60), Expect = 0.53
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 77  QTILDKCNDXIKWLDSNQLADKEEYE 154
           +T+     + I+WLDSN  A K+E+E
Sbjct: 566 ETVDKAVKETIEWLDSNTTAAKDEFE 591



 Score = 26.6 bits (56), Expect = 1.6
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 162 QKELEGIYNPIITNMYQ 212
           QKELE + NPI+  +YQ
Sbjct: 594 QKELESVANPIMAKIYQ 610


>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 220 EESPEVCRASRAEHPEPE 273
           EE+P    AS  EHPEP+
Sbjct: 244 EEAPAAAAASENEHPEPK 261


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 86  LDKCNDXIKWLDSNQLADKEEYEHXTERIGR 178
           +D CN  +K LD N + + ++ E    + GR
Sbjct: 416 IDPCNLFVKNLDDNIVGNTQQLEELFSKFGR 446


>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 700

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -3

Query: 348 KCGVECWFNRXXRWWGQRLQP 286
           KCG    F +    WG RL P
Sbjct: 610 KCGPYSMFTQLMHQWGDRLSP 630


>SPBC409.09c |mis13|cnl1|kinetochore protein
           Mis13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 329

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +1

Query: 247 SRAEHPEPEVPPPGLEALAPPSXXSIKPTFHTTLKPTCNN 366
           S+ +  + + P P  +A   P+   +KP FHT L     N
Sbjct: 228 SKQDLDKQDSPLPPDDAPELPNISKLKPKFHTLLDMLAEN 267


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 262 PEPEVPPPGLEALAPP 309
           P P  PPPG+    PP
Sbjct: 761 PPPPPPPPGVAGAGPP 776


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,245,452
Number of Sequences: 5004
Number of extensions: 19481
Number of successful extensions: 64
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)