Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0671
(428 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45540| Best HMM Match : HSP70 (HMM E-Value=0) 44 7e-05
SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.006
SB_8490| Best HMM Match : HSP70 (HMM E-Value=0) 34 0.058
SB_31775| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.2
SB_47549| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_10066| Best HMM Match : GPS (HMM E-Value=8.6e-07) 29 2.2
SB_1024| Best HMM Match : Ank (HMM E-Value=0) 29 2.2
SB_50337| Best HMM Match : Extensin_1 (HMM E-Value=0.19) 28 3.8
SB_56365| Best HMM Match : SDH_beta (HMM E-Value=7.6) 27 6.6
SB_37025| Best HMM Match : Homeobox (HMM E-Value=1.3e-16) 27 6.6
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 27 6.6
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_14695| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_3427| Best HMM Match : Homeobox (HMM E-Value=4e-24) 27 8.7
>SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1097
Score = 43.6 bits (98), Expect = 7e-05
Identities = 15/32 (46%), Positives = 25/32 (78%)
Frame = +2
Query: 77 QTILDKCNDXIKWLDSNQLADKEEYEHXTERI 172
+ ILDKC + +KWLD+NQ A+K+E+E+ + +
Sbjct: 570 KAILDKCTEVLKWLDTNQTAEKDEFEYHQKEL 601
Score = 31.9 bits (69), Expect = 0.23
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Frame = +3
Query: 3 SYCFSMKSTMAG**AQGKXXXXXXXXXXXXXXXXXXXGWIPTSWPTRRS-MSTXQKELEG 179
SY +SMKST+ + K W+ T+ + QKELE
Sbjct: 546 SYAYSMKSTVED--DKVKDKISEEDKKAILDKCTEVLKWLDTNQTAEKDEFEYHQKELEK 603
Query: 180 IYNPIITNMYQ 212
+ NPIIT +YQ
Sbjct: 604 VCNPIITKLYQ 614
>SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 37.1 bits (82), Expect = 0.006
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +3
Query: 3 SYCFSMKSTMAG**AQGKXXXXXXXXXXXXXXXXXXXGWIPTSWPTRRS-MSTXQKELEG 179
SY FSMKSTM + K W+ + + + QKELEG
Sbjct: 638 SYAFSMKSTMED--EKVKDKLSEDEREKVISRCKATLDWLEHNQSAEKEEIDAHQKELEG 695
Query: 180 IYNPIITNMYQ 212
+ NPIIT +YQ
Sbjct: 696 VCNPIITKLYQ 706
>SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 640
Score = 33.9 bits (74), Expect = 0.058
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 80 TILDKCNDXIKWLDSNQLADKEEYEHXTERIGR 178
T+ +K + + WL+ N LA+KEE+E + + R
Sbjct: 570 TVKNKVEEVLNWLEKNSLAEKEEFEEQEKELQR 602
>SB_31775| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 551
Score = 29.5 bits (63), Expect = 1.2
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = +1
Query: 226 SPEVCRASRAEHPEPEVPPPGLEALAPPSXXSIKPTFHTTLKPTCNNHLXTS 381
S + C A+ P + L+ P S S +PT TL CNN TS
Sbjct: 417 SEQYCYFGDAKVPATFMNDTTLKCTVPTSSVSSRPTVAVTLNGGCNNFTTTS 468
>SB_47549| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 302
Score = 29.1 bits (62), Expect = 1.6
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +2
Query: 89 DKCNDXIKWLDSNQLADKEEYEHXTERIGRH--LQSDNYEYVPG 214
D N+ + S+QL + + + R+ H +QSDNY +VPG
Sbjct: 51 DVTNNRSHYPASDQLMSELQVQRDENRVQEHGRVQSDNYLFVPG 94
>SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1128
Score = 29.1 bits (62), Expect = 1.6
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +1
Query: 238 CRASRAEHPEPEVPPPGLEALAPPSXXSIKPTFHTTLKPTCNNHLXTS 381
C A A+ P+ +VPPP APP + P TT PT + T+
Sbjct: 92 CNAKPAQ-PDTDVPPPPATTSAPPPPTTTAPP-ATTSPPTTTDSPPTT 137
>SB_10066| Best HMM Match : GPS (HMM E-Value=8.6e-07)
Length = 1146
Score = 28.7 bits (61), Expect = 2.2
Identities = 18/53 (33%), Positives = 23/53 (43%)
Frame = +1
Query: 226 SPEVCRASRAEHPEPEVPPPGLEALAPPSXXSIKPTFHTTLKPTCNNHLXTSP 384
S + C A+ P + L+ P S S +PT TL CNN TSP
Sbjct: 84 SEQYCYFGDAKVPATFMNDTTLKCTVPTSSVSSRPTVAVTLNGGCNN-FTTSP 135
>SB_1024| Best HMM Match : Ank (HMM E-Value=0)
Length = 891
Score = 28.7 bits (61), Expect = 2.2
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +1
Query: 217 PEESP--EVCRASRAEHPEPEVPPPGLEALAPPSXXSIKPT 333
PE+ P EV A R E P+ E PP PP S KPT
Sbjct: 771 PEQPPIGEVESAVRREQPKSEKTPPSTTPSPPPKQPS-KPT 810
>SB_50337| Best HMM Match : Extensin_1 (HMM E-Value=0.19)
Length = 86
Score = 27.9 bits (59), Expect = 3.8
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 262 PEPEVPPPGLEALAPPSXXSIKP 330
P+P+ PPPG PPS + P
Sbjct: 28 PKPDTPPPGTNIPTPPSPNTPPP 50
>SB_56365| Best HMM Match : SDH_beta (HMM E-Value=7.6)
Length = 331
Score = 27.1 bits (57), Expect = 6.6
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = +1
Query: 283 PGLEALAPPSXXSIKPTFHTTLKP---TCNNHLXTSP 384
P L L P + +I PT TLKP TCN + +P
Sbjct: 85 PSLMQLQPGNVLTISPTSEITLKPNGGTCNVDVAFTP 121
>SB_37025| Best HMM Match : Homeobox (HMM E-Value=1.3e-16)
Length = 154
Score = 27.1 bits (57), Expect = 6.6
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +1
Query: 217 PEESPEVCRASRAEHPEPEVPPPGLEALAPPSXXSIKPTFHTTLKPTCNNHLXTSP 384
P SP+V R ++P PPP + PPS S P + L + + T P
Sbjct: 81 PALSPQVYRGYPFQYPG--TPPPPMYPAFPPSFPSSPPPEYPGLPVSSPGRVCTRP 134
>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
Length = 305
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +1
Query: 262 PEPEVPPPGLEALAPPSXXSIKPTFHTTLK 351
P P PPP LE APP S+ T +K
Sbjct: 202 PPPPPPPPILELAAPPPPGSVLGAALTGIK 231
>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/47 (31%), Positives = 18/47 (38%), Gaps = 6/47 (12%)
Frame = +1
Query: 262 PEPEVPPPGLEALAPPSXXSIK------PTFHTTLKPTCNNHLXTSP 384
P P+ P P L P+ + PT HT PT H T P
Sbjct: 79 PTPKTPTPTTSTLTKPTPATTPTPTKPTPTAHTPTTPTPTAHTPTKP 125
>SB_14695| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 207
Score = 26.6 bits (56), Expect = 8.7
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +1
Query: 217 PEESPEVCRASRAEHPEPEVPPPGLEALAPPSXXSIKPTFHTTLKPTCNNHLXTSP 384
P SP+V R ++P PPP + PPS S P + L + + T P
Sbjct: 134 PVLSPQVYRGYPFQYPG--TPPPPMYPAFPPSFPSSPPPEYPGLPVSSPGRVCTRP 187
>SB_3427| Best HMM Match : Homeobox (HMM E-Value=4e-24)
Length = 245
Score = 26.6 bits (56), Expect = 8.7
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +1
Query: 217 PEESPEVCRASRAEHPEPEVPPPGLEALAPPSXXSIKPTFHTTLKPTCNNHLXTSP 384
P SP+V R ++P PPP + PPS S P + L + + T P
Sbjct: 171 PVLSPQVYRGYPFQYPG--TPPPPMYPAFPPSFPSSPPPEYPGLPVSSPGRVSTRP 224
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,085,235
Number of Sequences: 59808
Number of extensions: 175350
Number of successful extensions: 650
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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