Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0670
         (647 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81094-4|CAB03152.1|  528|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z70205-1|CAA94117.2|  460|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AL033514-16|CAA22103.2|  465|Caenorhabditis elegans Hypothetical...    27   8.7  

>Z81094-4|CAB03152.1|  528|Caenorhabditis elegans Hypothetical
           protein F58G11.6 protein.
          Length = 528

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +2

Query: 80  FKQKFDYFKN*HLALINIHKSKVNSFRINYYYTRNSQPMSLN 205
           FK++ D+F + ++ L+ +HK  +        + R S P+ LN
Sbjct: 178 FKERLDFFFSKYIPLLKVHKMPLLDHLGGVEFLRMSGPLYLN 219


>Z70205-1|CAA94117.2|  460|Caenorhabditis elegans Hypothetical
           protein C11H1.2 protein.
          Length = 460

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +1

Query: 478 SFILIGVIKM*SIRRVLIMCVKVFV 552
           SF L+GVI + S+R +LI   K FV
Sbjct: 350 SFFLVGVIAITSVRGLLITMAKFFV 374


>AL033514-16|CAA22103.2|  465|Caenorhabditis elegans Hypothetical
           protein Y75B8A.16 protein.
          Length = 465

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +1

Query: 478 SFILIGVIKM*SIRRVLIMCVKVFV 552
           SF L+GVI + S+R +LI   K FV
Sbjct: 353 SFFLVGVIAVTSVRGLLITMTKFFV 377


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,903,759
Number of Sequences: 27780
Number of extensions: 219080
Number of successful extensions: 409
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)