Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0670
         (647 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    23   1.9  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    23   1.9  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   1.9  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   2.5  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   5.9  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   5.9  

>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 337 RYASSFIEKNFHSSRYYT 284
           RY +  +EK FH +RY T
Sbjct: 17  RYQTLELEKEFHYNRYLT 34


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 337 RYASSFIEKNFHSSRYYT 284
           RY +  +EK FH +RY T
Sbjct: 17  RYQTLELEKEFHFNRYLT 34


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 337 RYASSFIEKNFHSSRYYT 284
           RY +  +EK FH +RY T
Sbjct: 279 RYQTLELEKEFHYNRYLT 296


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 525 SHYVC*SICCALIKDLFKNTQCK 593
           +H V  S C    ++L K+T CK
Sbjct: 45  AHRVVLSACSPYFRELLKSTPCK 67


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 561 STHNKYFNTHNENTSNRLHFYDTNKNK*FYMN 466
           S +N Y N +N N +N    Y+ N  K  Y N
Sbjct: 92  SNYNNYNNNYNNNYNNN---YNNNYKK-LYKN 119


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 561 STHNKYFNTHNENTSNRLHFYDTNKNK*FYMN 466
           S +N Y N +N N +N    Y+ N  K  Y N
Sbjct: 92  SNYNNYNNNYNNNYNNN---YNNNYKK-LYKN 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,123
Number of Sequences: 438
Number of extensions: 2847
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)