Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0664
         (300 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...    29   0.11 
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...    29   0.15 
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   1.4  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    25   1.8  
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    25   1.8  
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar...    25   2.4  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    24   5.5  
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    24   5.5  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    24   5.5  
SPAC513.03 |mfm2||M-factor precursor Mfm2|Schizosaccharomyces po...    23   7.3  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    23   9.6  
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    23   9.6  
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch...    23   9.6  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    23   9.6  

>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 29.5 bits (63), Expect = 0.11
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -2

Query: 281 VSRDIRTTTEARRPGTARNTRRPKPTELSV 192
           V+R +RT+T  RRP T    R+PK    SV
Sbjct: 21  VARKVRTSTTFRRPKTLELARKPKYARKSV 50


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 29.1 bits (62), Expect = 0.15
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -2

Query: 281 VSRDIRTTTEARRPGTARNTRRPKPTELSV 192
           V++ +RT+T  RRP T + +R+PK    SV
Sbjct: 21  VAKKVRTSTTFRRPKTLQLSRKPKYARKSV 50


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 254 EARRPGTARNTRRPKPTELSVCCRERSETPRHRN 153
           EA  PG  RNTR+    ++S+    ++ET   +N
Sbjct: 475 EADYPGVNRNTRQDDVQDISMETESQNETDESQN 508


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 267 QDHHRGPAPRHSEKHSASEADRAERLLPGALRD 169
           ++HH+GP  +H+E+   +     E L+  A  D
Sbjct: 416 KEHHQGPKEKHNERPEQNMQSSHELLVIEAFAD 448


>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = -2

Query: 230 RNTRRPKPTELSVCC--RERSETPRHRNKPSRPVWSRRSPHH 111
           RN +  K T  SV      R +  R  N P  P W+ R+ HH
Sbjct: 866 RNKKAAKLTADSVPFPFESREQYERSLNLPMGPEWTTRASHH 907


>SPBC4B4.04 |||translation initiation factor eIF2A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 576

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 289 AEP*AGTSGPPQRPGAQAQRETLGVRSRQS*AFAAGSAQR 170
           A+P    +G  + PGA+ Q  T   R  +    ++GSA +
Sbjct: 440 AKPSVKPAGAYRPPGARGQNSTFSYRREEIDVMSSGSANK 479


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = -2

Query: 236  TARNTRRPKPTELSVCCRERSETPRHRNKPSRPVWSRRSPHHFH 105
            T+ +     P   SV  R +S+  RH    S    S+   HH H
Sbjct: 1268 TSSSMASAAPARTSVS-RSKSKAERHETSTSSRKSSKSGEHHHH 1310


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 259 PQRPGAQAQRETLGVRSRQS*AFAAGSAQRRP 164
           P +P   +  +TLG  +R S A  AGS    P
Sbjct: 296 PYKPYLNSSHDTLGSSTRPSSADTAGSPATSP 327


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 18/60 (30%), Positives = 24/60 (40%)
 Frame = +3

Query: 120 TPSRPNRSRRFIPVTGRL*ALPAANAQLCRLRTPSVSRCAWAPGLCGGPDVPAHGSAPPG 299
           TPS P  S   +P    + A+P        + T S       P + G P V A G+  PG
Sbjct: 430 TPSLPVPSIPAVPGMEAM-AMPPGVTSSIAVPTTSSMPLQGMPTMFGAPGVSAPGTEAPG 488


>SPAC513.03 |mfm2||M-factor precursor Mfm2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 44

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 80  SSSISKYYNGNGVDSVETKQVE 145
           SSSI   YN N  D V+T+ ++
Sbjct: 10  SSSIVNAYNNNPTDVVKTQNIK 31


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 14/51 (27%), Positives = 21/51 (41%)
 Frame = +2

Query: 80  SSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAPGSKRSALSASDAECFS 232
           SSS S   + +   S          S   +S S+P S  S +S+S +   S
Sbjct: 266 SSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSS 316


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 10/41 (24%), Positives = 17/41 (41%)
 Frame = -2

Query: 263 TTTEARRPGTARNTRRPKPTELSVCCRERSETPRHRNKPSR 141
           TTT+   P     T  P P   S   ++ +  P  +  P++
Sbjct: 145 TTTKPAAPAAQSKTETPAPKVTSESTKKETAAPPPQETPTK 185


>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 245 RPGTARNTRRPKPTELSVCCRERSETPRHRNKPSRPVWSRRS 120
           RP  + +      TE+S      SE  R++ K SR  +SR S
Sbjct: 174 RPANSTSVPNAVNTEISAARATESEASRNQTKASRD-YSRAS 214


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 149 PSRPVWSRRSPHHFHCSI 96
           P+ P WSR  P  F C +
Sbjct: 335 PTLPQWSRFRPLEFQCFV 352


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,239,379
Number of Sequences: 5004
Number of extensions: 21646
Number of successful extensions: 85
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)