BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0664 (300 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S... 29 0.11 SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch... 29 0.15 SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 26 1.4 SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 25 1.8 SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 25 1.8 SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar... 25 2.4 SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 24 5.5 SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 24 5.5 SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 24 5.5 SPAC513.03 |mfm2||M-factor precursor Mfm2|Schizosaccharomyces po... 23 7.3 SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 23 9.6 SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 23 9.6 SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 23 9.6 SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 23 9.6 >SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|Schizosaccharomyces pombe|chr 2|||Manual Length = 141 Score = 29.5 bits (63), Expect = 0.11 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = -2 Query: 281 VSRDIRTTTEARRPGTARNTRRPKPTELSV 192 V+R +RT+T RRP T R+PK SV Sbjct: 21 VARKVRTSTTFRRPKTLELARKPKYARKSV 50 >SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosaccharomyces pombe|chr 2|||Manual Length = 141 Score = 29.1 bits (62), Expect = 0.15 Identities = 13/30 (43%), Positives = 20/30 (66%) Frame = -2 Query: 281 VSRDIRTTTEARRPGTARNTRRPKPTELSV 192 V++ +RT+T RRP T + +R+PK SV Sbjct: 21 VAKKVRTSTTFRRPKTLQLSRKPKYARKSV 50 >SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 2052 Score = 25.8 bits (54), Expect = 1.4 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = -2 Query: 254 EARRPGTARNTRRPKPTELSVCCRERSETPRHRN 153 EA PG RNTR+ ++S+ ++ET +N Sbjct: 475 EADYPGVNRNTRQDDVQDISMETESQNETDESQN 508 >SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosaccharomyces pombe|chr 1|||Manual Length = 1002 Score = 25.4 bits (53), Expect = 1.8 Identities = 10/33 (30%), Positives = 18/33 (54%) Frame = -1 Query: 267 QDHHRGPAPRHSEKHSASEADRAERLLPGALRD 169 ++HH+GP +H+E+ + E L+ A D Sbjct: 416 KEHHQGPKEKHNERPEQNMQSSHELLVIEAFAD 448 >SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pombe|chr 1|||Manual Length = 929 Score = 25.4 bits (53), Expect = 1.8 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 2/42 (4%) Frame = -2 Query: 230 RNTRRPKPTELSVCC--RERSETPRHRNKPSRPVWSRRSPHH 111 RN + K T SV R + R N P P W+ R+ HH Sbjct: 866 RNKKAAKLTADSVPFPFESREQYERSLNLPMGPEWTTRASHH 907 >SPBC4B4.04 |||translation initiation factor eIF2A |Schizosaccharomyces pombe|chr 2|||Manual Length = 576 Score = 25.0 bits (52), Expect = 2.4 Identities = 12/40 (30%), Positives = 20/40 (50%) Frame = -3 Query: 289 AEP*AGTSGPPQRPGAQAQRETLGVRSRQS*AFAAGSAQR 170 A+P +G + PGA+ Q T R + ++GSA + Sbjct: 440 AKPSVKPAGAYRPPGARGQNSTFSYRREEIDVMSSGSANK 479 >SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 1611 Score = 23.8 bits (49), Expect = 5.5 Identities = 13/44 (29%), Positives = 18/44 (40%) Frame = -2 Query: 236 TARNTRRPKPTELSVCCRERSETPRHRNKPSRPVWSRRSPHHFH 105 T+ + P SV R +S+ RH S S+ HH H Sbjct: 1268 TSSSMASAAPARTSVS-RSKSKAERHETSTSSRKSSKSGEHHHH 1310 >SPBC947.01 |||AAA family ATPase, unknown biological role|Schizosaccharomyces pombe|chr 2|||Manual Length = 660 Score = 23.8 bits (49), Expect = 5.5 Identities = 12/32 (37%), Positives = 16/32 (50%) Frame = -3 Query: 259 PQRPGAQAQRETLGVRSRQS*AFAAGSAQRRP 164 P +P + +TLG +R S A AGS P Sbjct: 296 PYKPYLNSSHDTLGSSTRPSSADTAGSPATSP 327 >SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 534 Score = 23.8 bits (49), Expect = 5.5 Identities = 18/60 (30%), Positives = 24/60 (40%) Frame = +3 Query: 120 TPSRPNRSRRFIPVTGRL*ALPAANAQLCRLRTPSVSRCAWAPGLCGGPDVPAHGSAPPG 299 TPS P S +P + A+P + T S P + G P V A G+ PG Sbjct: 430 TPSLPVPSIPAVPGMEAM-AMPPGVTSSIAVPTTSSMPLQGMPTMFGAPGVSAPGTEAPG 488 >SPAC513.03 |mfm2||M-factor precursor Mfm2|Schizosaccharomyces pombe|chr 1|||Manual Length = 44 Score = 23.4 bits (48), Expect = 7.3 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = +2 Query: 80 SSSISKYYNGNGVDSVETKQVE 145 SSSI YN N D V+T+ ++ Sbjct: 10 SSSIVNAYNNNPTDVVKTQNIK 31 >SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 534 Score = 23.0 bits (47), Expect = 9.6 Identities = 14/51 (27%), Positives = 21/51 (41%) Frame = +2 Query: 80 SSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAPGSKRSALSASDAECFS 232 SSS S + + S S +S S+P S S +S+S + S Sbjct: 266 SSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSS 316 >SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosaccharomyces pombe|chr 3|||Manual Length = 662 Score = 23.0 bits (47), Expect = 9.6 Identities = 10/41 (24%), Positives = 17/41 (41%) Frame = -2 Query: 263 TTTEARRPGTARNTRRPKPTELSVCCRERSETPRHRNKPSR 141 TTT+ P T P P S ++ + P + P++ Sbjct: 145 TTTKPAAPAAQSKTETPAPKVTSESTKKETAAPPPQETPTK 185 >SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 219 Score = 23.0 bits (47), Expect = 9.6 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = -2 Query: 245 RPGTARNTRRPKPTELSVCCRERSETPRHRNKPSRPVWSRRS 120 RP + + TE+S SE R++ K SR +SR S Sbjct: 174 RPANSTSVPNAVNTEISAARATESEASRNQTKASRD-YSRAS 214 >SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sfc3|Schizosaccharomyces pombe|chr 2|||Manual Length = 1339 Score = 23.0 bits (47), Expect = 9.6 Identities = 8/18 (44%), Positives = 10/18 (55%) Frame = -2 Query: 149 PSRPVWSRRSPHHFHCSI 96 P+ P WSR P F C + Sbjct: 335 PTLPQWSRFRPLEFQCFV 352 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,239,379 Number of Sequences: 5004 Number of extensions: 21646 Number of successful extensions: 85 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 82 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 85 length of database: 2,362,478 effective HSP length: 63 effective length of database: 2,047,226 effective search space used: 73700136 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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