Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0664
(300 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 9e-04
SB_39786| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.30
SB_23556| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.40
SB_46036| Best HMM Match : PSRT (HMM E-Value=1) 29 0.70
SB_43189| Best HMM Match : PGAMP (HMM E-Value=2.1) 29 0.70
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.92
SB_19124| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.2
SB_9087| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.2
SB_31178| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.6
SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4) 27 2.1
SB_26402| Best HMM Match : K-box (HMM E-Value=1) 27 2.8
SB_43996| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.8
SB_32907| Best HMM Match : Gly_radical (HMM E-Value=6) 27 2.8
SB_49940| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.7
SB_51968| Best HMM Match : PT (HMM E-Value=0.54) 27 3.7
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35) 27 3.7
SB_28880| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.7
SB_2236| Best HMM Match : PkinA_anch (HMM E-Value=3.3) 27 3.7
SB_40971| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.9
SB_39808| Best HMM Match : EGF_CA (HMM E-Value=6.3e-35) 26 6.5
SB_39039| Best HMM Match : Drf_FH1 (HMM E-Value=6.4) 26 6.5
SB_31697| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.5
SB_24641| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.5
SB_59620| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.5
SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.5
SB_14911| Best HMM Match : Amelogenin (HMM E-Value=1.7) 26 6.5
SB_3882| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.5
SB_41435| Best HMM Match : Cu2_monoox_C (HMM E-Value=4e-36) 25 8.6
SB_37980| Best HMM Match : 7tm_2 (HMM E-Value=5.3e-13) 25 8.6
SB_34906| Best HMM Match : Cadherin (HMM E-Value=0) 25 8.6
SB_28528| Best HMM Match : TUDOR (HMM E-Value=0.34) 25 8.6
SB_23288| Best HMM Match : MMR_HSR1 (HMM E-Value=8.3e-06) 25 8.6
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 25 8.6
SB_6936| Best HMM Match : TP2 (HMM E-Value=1.1) 25 8.6
SB_41093| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.6
SB_21662| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.6
>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 38.7 bits (86), Expect = 9e-04
Identities = 23/63 (36%), Positives = 28/63 (44%)
Frame = -2
Query: 293 RCRAVSRDIRTTTEARRPGTARNTRRPKPTELSVCCRERSETPRHRNKPSRPVWSRRSPH 114
R R+ SR R +R P R +R P P S R RS +PR R+ SR RR
Sbjct: 223 RSRSRSRSPRRRRRSRSPRRRRRSRSPSPHHRSHRSRSRSRSPRRRHSRSRSPTHRRHRS 282
Query: 113 HFH 105
H
Sbjct: 283 RSH 285
>SB_39786| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 294
Score = 30.3 bits (65), Expect = 0.30
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Frame = -2
Query: 278 SRDIRTTTEARRPGTARNTRRPKPTELSVCCR----ERSETPRHRNKPSRPVWSRRSPHH 111
+RD R T R P ++ R P+P++ R +R P + + RP +R P H
Sbjct: 191 NRDTRDTINNRHPRPSQQQRHPRPSQQQRHPRPSQQQRYPRPSQQQRQPRPSQQQRYPRH 250
>SB_23556| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 671
Score = 29.9 bits (64), Expect = 0.40
Identities = 15/59 (25%), Positives = 31/59 (52%)
Frame = +2
Query: 80 SSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAPGSKRSALSASDAECFSLCLGAGPL 256
++ +S+Y ++++ + ++++Y + P S +A SD FSLC+ GPL
Sbjct: 137 NTRLSEYLESRDCEAMDVR-LQRLYEHELVMYRLPESSATATPLSDLFDFSLCMCYGPL 194
>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
Length = 878
Score = 29.1 bits (62), Expect = 0.70
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -2
Query: 266 RTTTEARRPGTARNTRRPKPTELSVCCRERSETPRHRN-KPSR 141
R+ T R+ T+ N R P P S R S +PR R+ PSR
Sbjct: 543 RSYTSPRQRRTSPNNRSPPPRRRSPSPRRPSPSPRRRSTSPSR 585
>SB_43189| Best HMM Match : PGAMP (HMM E-Value=2.1)
Length = 461
Score = 29.1 bits (62), Expect = 0.70
Identities = 17/57 (29%), Positives = 22/57 (38%)
Frame = -2
Query: 284 AVSRDIRTTTEARRPGTARNTRRPKPTELSVCCRERSETPRHRNKPSRPVWSRRSPH 114
A+ + T RP + R R P S R +T PSRP + R PH
Sbjct: 4 ALHNTLTRTRVPSRPCSLRTVRHPHTGTKSTMAYARDDTLTRTRVPSRPSRTVRHPH 60
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 28.7 bits (61), Expect = 0.92
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = +3
Query: 120 TPSRPNR-SRRFIPVTGRL*ALPAANAQLCRLRTPSVSRCAWAPGLCGGPDVPAHGSAP 293
TPS P+ S P T + P+ + TPS APG G P P+ SAP
Sbjct: 466 TPSTPSTPSTPSTPSTPSTPSTPSTPSTSSTPSTPSTPSTPSAPGTPGTPSTPSTPSAP 524
>SB_19124| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 224
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = -2
Query: 278 SRDIRTTTEARRPGTARNTRRPKPTELSVCCRERSETPRHRNKPSRPVWSRRSP 117
+RD R T R P ++ R P+P++ ++R P + + RP +R P
Sbjct: 151 NRDTRDTINNRHPRPSQQQRYPRPSQ-----QQRYPRPSQQQRHPRPSQQQRHP 199
>SB_9087| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 831
Score = 28.3 bits (60), Expect = 1.2
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 225 VSRCAWAPGLCGGPDVPAHGS 287
++R W+ LCGGPD+ GS
Sbjct: 108 ITRSWWSSRLCGGPDINDDGS 128
>SB_31178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 281
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 261 HHRGPAPRHSEKHSASEADRAER 193
H GP+ RHS H +E++ A+R
Sbjct: 123 HKEGPSSRHSNVHELNESELAKR 145
>SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)
Length = 428
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -1
Query: 297 RAVQSREQGHQDHHRGPAPRHSEKHSASEADRAER 193
R +SR H+DH PR S HS D ER
Sbjct: 205 RRSRSRSLRHEDHDDA-TPRRSRSHSLRHEDEEER 238
>SB_26402| Best HMM Match : K-box (HMM E-Value=1)
Length = 166
Score = 27.1 bits (57), Expect = 2.8
Identities = 15/73 (20%), Positives = 33/73 (45%)
Frame = +2
Query: 38 RLSKMTMLIQQLNCSSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAPGSKRSALSASD 217
+L + ++QQ++ S + VDS++ + EK + + SK+ L+++
Sbjct: 70 KLGETEYILQQMDSSVKQTAAIKEKDVDSLQQQLAEKDRRIEELNSKLESSKKDVLNSNQ 129
Query: 218 AECFSLCLGAGPL 256
+C GP+
Sbjct: 130 EKCLEKFKANGPV 142
>SB_43996| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1056
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/35 (34%), Positives = 14/35 (40%)
Frame = -1
Query: 258 HRGPAPRHSEKHSASEADRAERLLPGALRDAPSPE 154
H P+P HS+ E LP PSPE
Sbjct: 741 HSQPSPEHSQPSPEHSLPSQEHSLPSPEHSQPSPE 775
>SB_32907| Best HMM Match : Gly_radical (HMM E-Value=6)
Length = 390
Score = 27.1 bits (57), Expect = 2.8
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -2
Query: 296 GRCRAVSRDIRTTTEARRPGTARNTRRPKPTELSVCCRERSETPR 162
G+ A + + T ARRP RRP PT + R + TPR
Sbjct: 11 GQNNATTTGVVPTPRARRPVPTPRARRPNPTTKA---RRPAPTPR 52
>SB_49940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 569
Score = 26.6 bits (56), Expect = 3.7
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = -1
Query: 270 HQDHHRGPAPRHSEKHSASEADRAERLLPGALRDAPSPE*TFSTCLVSTESTPFP 106
H HH RH KH+A A R + D+P+ + T +S +S FP
Sbjct: 167 HPSHHHVTKSRHQTKHNAKHATRVFSI------DSPNEDSQGKTANIS-DSASFP 214
>SB_51968| Best HMM Match : PT (HMM E-Value=0.54)
Length = 514
Score = 26.6 bits (56), Expect = 3.7
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Frame = -2
Query: 287 RAVSRDIRTTTEARRPGTARNTRR--PKPTELSVCCRERSETPRHRNKPSRPV 135
R R + T+ P R P+PT+ R+R T R KP++P+
Sbjct: 257 RPTERPTKKPTKPLLPEVEPEEERATPRPTKAKPTTRKRMPTERPTKKPTKPL 309
>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
Length = 2049
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -2
Query: 299 SGRCRAVSRDIRTTTEARRPGTARNTRRPKPTELSVCCRERSETP 165
S RC+ ++ ++ ++PG+A +PK + S R+RS +P
Sbjct: 1892 SRRCKTTAKALKKAKGKQKPGSATKKTKPK-QDSSKKKRKRSPSP 1935
>SB_28880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 196
Score = 26.6 bits (56), Expect = 3.7
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +3
Query: 225 VSRCAWAPGLCGGPDVPAH 281
V RC GL GGP+ PAH
Sbjct: 45 VERCCRFEGLPGGPEDPAH 63
>SB_2236| Best HMM Match : PkinA_anch (HMM E-Value=3.3)
Length = 331
Score = 26.6 bits (56), Expect = 3.7
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -3
Query: 295 GGAEP*AGTSGPPQRPGAQAQRETLGVRSRQS*AFAAGSAQRRPV 161
GGA G + PPQRP T+ V + + A S +RPV
Sbjct: 19 GGA---GGANAPPQRPKVHFWFSTIDVLLVEKLGYVAKSDNKRPV 60
>SB_40971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 274 GTSGPPQRPGAQAQRETLGVRSRQ 203
G GPP RPG Q+ T G R ++
Sbjct: 129 GPRGPPGRPGHPGQKGTRGRRGQR 152
>SB_39808| Best HMM Match : EGF_CA (HMM E-Value=6.3e-35)
Length = 850
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 158 RNKPSRPVWSRRSPHHFHC 102
+NK V S +SPHH HC
Sbjct: 589 KNKKIVSVPSGKSPHHLHC 607
>SB_39039| Best HMM Match : Drf_FH1 (HMM E-Value=6.4)
Length = 254
Score = 25.8 bits (54), Expect = 6.5
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = -1
Query: 189 LPGALR--DAPSPE*TFSTCLVSTESTPFP 106
LPGA R AP+P+ T +T L TE P P
Sbjct: 198 LPGASRAAPAPTPQPTAATPLPETEPEPEP 227
>SB_31697| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 518
Score = 25.8 bits (54), Expect = 6.5
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = -2
Query: 254 EARRPGTARNTRRPKPTELSVCCRERSETPRHRNKPSRPVWSRRSP 117
E ++P A+ T + S ++ + +P + PS+P WSR +P
Sbjct: 432 EEKKPLEAKTTPNVG-SGASSAFQKNTPSPSPKTTPSKPSWSRPTP 476
>SB_24641| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1120
Score = 25.8 bits (54), Expect = 6.5
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +2
Query: 65 QQLNCSSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAP 184
Q + S K G+G + E KQ EK GDG S P
Sbjct: 553 QPASKSKQSEKGKQGDGQPASEPKQSEKGKQGDGQPASEP 592
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 107 GNGVDSVETKQVEKVYSGDGASLSAP 184
G+G + E+KQ EK GDG S P
Sbjct: 448 GDGQPASESKQSEKGKQGDGQPASEP 473
Score = 25.4 bits (53), Expect = 8.6
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +2
Query: 80 SSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAP 184
S K G+G + E KQ EK GDG S P
Sbjct: 456 SKQSEKGKQGDGQPASEPKQSEKGKQGDGQPASEP 490
>SB_59620| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 249
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/36 (33%), Positives = 14/36 (38%)
Frame = -2
Query: 245 RPGTARNTRRPKPTELSVCCRERSETPRHRNKPSRP 138
RP T +T + CC P H N SRP
Sbjct: 184 RPETVCHTTLTLVNRTNSCCHTTPNLPSHLNTQSRP 219
>SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 736
Score = 25.8 bits (54), Expect = 6.5
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +3
Query: 153 IPVTGRL*ALPAANAQ--LCRLRTPSVSRCAWAP 248
IP +GR L A+ LCR +P ++R AW P
Sbjct: 534 IPTSGRCSDLDTNTAKHVLCRGLSPILTRVAWRP 567
>SB_14911| Best HMM Match : Amelogenin (HMM E-Value=1.7)
Length = 326
Score = 25.8 bits (54), Expect = 6.5
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -1
Query: 282 REQGHQDHHRGPAPRHSEKHSASEA 208
R+ G++D P PRHS H +++
Sbjct: 212 RDSGNRDRVTDPYPRHSSPHHRAQS 236
>SB_3882| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 427
Score = 25.8 bits (54), Expect = 6.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 221 RRPKPTELSVCCRERSETP 165
RRP+ + CCR+R E P
Sbjct: 100 RRPRRSHRMFCCRQREEYP 118
>SB_41435| Best HMM Match : Cu2_monoox_C (HMM E-Value=4e-36)
Length = 821
Score = 25.4 bits (53), Expect = 8.6
Identities = 16/50 (32%), Positives = 20/50 (40%)
Frame = -2
Query: 266 RTTTEARRPGTARNTRRPKPTELSVCCRERSETPRHRNKPSRPVWSRRSP 117
R T E R PG N +RP + C T + R P R +R P
Sbjct: 326 RVTNEKRPPGRVTNEKRPPGKVTNQKCPPSRVTNKKR-PPGRITNEKRPP 374
Score = 25.4 bits (53), Expect = 8.6
Identities = 15/50 (30%), Positives = 20/50 (40%)
Frame = -2
Query: 266 RTTTEARRPGTARNTRRPKPTELSVCCRERSETPRHRNKPSRPVWSRRSP 117
R T E R PG N +RP P ++ R + P R +R P
Sbjct: 366 RITNEKRPPGRVTNQKRP-PGRVTNKKRPPGRITNQKRPPGRVTNQKRPP 414
>SB_37980| Best HMM Match : 7tm_2 (HMM E-Value=5.3e-13)
Length = 1297
Score = 25.4 bits (53), Expect = 8.6
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = -2
Query: 275 RDIRTTTEARRPGTARNTRRPKPTELSVCCRERSETPRHRNKPSRPV 135
RDI E R + RR SVC RERS + +N P+ V
Sbjct: 147 RDINEP-EIRNSSGGASARRSPGRVWSVCSRERSCLGKCKNPPASSV 192
>SB_34906| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 3922
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 107 GNGVDSVETKQVEKVYSGDGASLSAPGSKRSALS 208
G ++ VET K+ SGD + AP S + +S
Sbjct: 2771 GKCINVVETSSAYKIASGDYGKVPAPASSITLVS 2804
>SB_28528| Best HMM Match : TUDOR (HMM E-Value=0.34)
Length = 736
Score = 25.4 bits (53), Expect = 8.6
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +2
Query: 98 YYNGNGVDSVETKQVEKVYSGDGASLSAPGSKRSAL-SASDAECFSLCL 241
YY G + T+ + YSGD +LS + L S ++ FS+ L
Sbjct: 660 YYPGFIASKLSTRYTVRTYSGDNVNLSIHDTPSVILDKVSISDTFSIIL 708
>SB_23288| Best HMM Match : MMR_HSR1 (HMM E-Value=8.3e-06)
Length = 210
Score = 25.4 bits (53), Expect = 8.6
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -1
Query: 264 DHHRGPAPRHSEKHSASEADRAERLLPG 181
D GP+ H ++HS +AD+ ++ G
Sbjct: 3 DDESGPSKAHRKRHSGPKADKKKKRSDG 30
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 25.4 bits (53), Expect = 8.6
Identities = 14/39 (35%), Positives = 15/39 (38%)
Frame = -1
Query: 273 GHQDHHRGPAPRHSEKHSASEADRAERLLPGALRDAPSP 157
G D H GP RH H +RL P RD P
Sbjct: 144 GPPDRH-GPPDRHGMDHGRGRGRGRDRLSPPPHRDRGRP 181
>SB_6936| Best HMM Match : TP2 (HMM E-Value=1.1)
Length = 256
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 221 RRPKPTELSVCCRERSETPRHRNK 150
+R KP E R+RS +PR R++
Sbjct: 189 KRDKPRERKKVARDRSRSPRSRSR 212
>SB_41093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 586
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -1
Query: 255 RGPAPRHSEKHSASEADRAERLLPGALRDAP 163
R P +HS + AD+ + +P A++ AP
Sbjct: 493 RQPMLQHSSGEESENADKENQEVPSAIKPAP 523
>SB_21662| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -1
Query: 255 RGPAPRHSEKHSASEADRAERLLPGALRDAP 163
R P +HS + AD+ + +P A++ AP
Sbjct: 95 RQPMLQHSSGEESENADKENQEVPSAIKPAP 125
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,208,797
Number of Sequences: 59808
Number of extensions: 199159
Number of successful extensions: 802
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 352102492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -