Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0663
         (650 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein p...    25   2.1  
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            24   4.8  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            24   4.8  
AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcript...    24   4.8  
DQ219482-1|ABB29886.1|  545|Anopheles gambiae cryptochrome 1 pro...    23   6.3  
AY823259-1|AAX18444.1|  194|Anopheles gambiae pburs protein.           23   8.4  
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    23   8.4  

>AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein
           protein.
          Length = 1077

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 445 ILREAFAPFGEISNCRIVRDPQTLKSKGY 531
           ++REAF  FG +S  R+  D       GY
Sbjct: 699 LVREAFEAFGRVSGARLNVDKTIALDVGY 727


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 626 QFVRMDLDPSHWPFI 582
           Q V+MD    HWPF+
Sbjct: 551 QAVKMDSGSEHWPFM 565


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 626 QFVRMDLDPSHWPFI 582
           Q V+MD    HWPF+
Sbjct: 552 QAVKMDSGSEHWPFM 566


>AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1049

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +1

Query: 526 GYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWS 630
           G +F    KKA  +A+++    +W  S S+   W+
Sbjct: 892 GESFTETAKKASRQASMRQWQNEW--SNSLNGRWT 924


>DQ219482-1|ABB29886.1|  545|Anopheles gambiae cryptochrome 1
           protein.
          Length = 545

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 143 RVFGWLSSPILAYRNLSITFLTSMNTNININRLTTCY 33
           R F  L   +L +R  S+T L  +   +NI +L  CY
Sbjct: 72  RQFRDLGGQLLVFRGDSVTVLRRLFEELNIKKL--CY 106


>AY823259-1|AAX18444.1|  194|Anopheles gambiae pburs protein.
          Length = 194

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
 Frame = +1

Query: 370 NQPKTDTSNHHHIFVG---DLSPEIETNILREAFAPFGEISNCRIVR 501
           N P    +NHH +FVG     + E  +NI    F     +  C  VR
Sbjct: 2   NIPARHGANHHELFVGIGRSAADESNSNI-ATVFHRQSRVEMCNSVR 47


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1201

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -1

Query: 629 DQFVRMDLDPSHWPFIAWMAASA 561
           DQ   +   P HWP++   + SA
Sbjct: 41  DQVCCVQRSPPHWPYLLCSSCSA 63


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 718,744
Number of Sequences: 2352
Number of extensions: 15542
Number of successful extensions: 26
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 64395870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)